Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0127
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 8e-10
SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 50 2e-06
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 40 0.002
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 38 0.006
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 36 0.025
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 35 0.057
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 34 0.099
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 34 0.099
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 34 0.099
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 33 0.23
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_1691| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6) 28 8.6
>SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/50 (52%), Positives = 38/50 (76%)
Frame = +3
Query: 294 TPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPI 443
T +ENR+Y+LKI CG YP +PPT +F+S+I+MN VNS+ G D+R+ +
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSK-GETDDREAEL 49
>SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +3
Query: 294 TPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQ 410
T +ENR+Y+LKI CG YP +PPT +F+S+I+MN VNS+
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSK 39
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 276 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILAR 452
+IG TPY ++ L I+ RYP EPP RF++ I H N +S +D ++P
Sbjct: 2 LIGAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGM 61
Query: 453 WQRDYTIKTVLQEVRRLM 506
W+ I +VL + LM
Sbjct: 62 WKPALNISSVLSTILILM 79
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 243 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 395
DD L W M++GPP T YE + + YP PPT FIS I H N
Sbjct: 358 DDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPN 409
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Frame = +3
Query: 231 LESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN---- 395
+E D+ W I GPP T Y + + YP PPT RF++++ H N
Sbjct: 1146 VEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYES 1205
Query: 396 ---CVNSQTGLVDNRQVPIL--ARWQRDYTIKTVLQEVRRLM 506
C++ VD+ Q L RW ++T+L V L+
Sbjct: 1206 GDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 1247
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3
Query: 246 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 362
D T T G I GPP TP+E Y+L I YP PP
Sbjct: 683 DETFTKLKGEIRGPPETPFEGGTYNLDIVIPETYPFNPP 721
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 273 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 380
MI GP TPY++ +++ I YPD PP+ ++S
Sbjct: 639 MIEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLS 674
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 255 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 362
L W I+GPP + YE ++ L I T YP +PP
Sbjct: 51 LYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPP 86
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 34.3 bits (75), Expect = 0.099
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 222 SWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 362
S G + DD L W I+GPP + YE ++ L I + YP +PP
Sbjct: 156 SAGPKGDD---LYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPP 199
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 34.3 bits (75), Expect = 0.099
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 222 SWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 362
S G + DD L W I+GPP + YE ++ L I + YP +PP
Sbjct: 116 SAGPKGDD---LYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPP 159
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 34.3 bits (75), Expect = 0.099
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 243 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 389
D+ + +W G+I+ P PY + ++I YP +PP F ++I+
Sbjct: 19 DESNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKITFKTKIY 66
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 243 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 380
DD+ H +I GP TPYE + I C YP PP + ++
Sbjct: 8 DDIPKIH--ALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMT 51
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 33.1 bits (72), Expect = 0.23
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 303 ENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILARWQRDYTIKT 479
ENR+ K+E T P EPP RF++ I H N +S +D ++P W+ I +
Sbjct: 29 ENRID--KLEAST--PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISS 84
Query: 480 VLQEVRRLM 506
VL + LM
Sbjct: 85 VLSTILILM 93
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/87 (25%), Positives = 36/87 (41%)
Frame = +3
Query: 255 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 434
L W + GPP T + Y +I YP +PP+ ++ + + L +
Sbjct: 38 LFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLTPNGRFEIGKKICLSMSAH 97
Query: 435 VPILARWQRDYTIKTVLQEVRRLMTLK 515
P WQ ++I+TVL + M K
Sbjct: 98 HP--ETWQPSWSIRTVLMAIIGFMPTK 122
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +3
Query: 216 TISWG-LESDDDMT----LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPT-ARFI 377
T S+G +ES ++T L + GP TPYE ++ ++++ +YP + P+ A F
Sbjct: 29 TDSFGRIESKHEVTILGGLNEFIVKFFGPVGTPYEGGVWKVRVDLPEKYPFKSPSIANFT 88
Query: 378 SRIHMNCV 401
I + CV
Sbjct: 89 IEISV-CV 95
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 473 DGIVTLPSSKNWDLSIIHKSSLTIDTVHMNPRNKAGC 363
+ + L SS+N +++HK T+D + RN GC
Sbjct: 3867 ESVTALESSENAVATLMHKIDGTLDNLSDEDRNSIGC 3903
>SB_1691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 539 WLRKLHVIFKS-HETSHFLKNCFDGIVTLPSSKNWDLSIIHKSSLTIDTVHMNP 381
W++K H IF+ H+ + NC D +V ++ WD + ++S ++TV +P
Sbjct: 302 WVKK-HQIFQDVHDMYESIVNCLDQMVE-DNTLKWDRKTLTEASGFLNTVTSSP 353
>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 458 LPSSKNWDLSIIHKSSLTIDTVHM-NPRNKAGCWWLI 351
LPS+K W +I H SL V + +P N WW +
Sbjct: 789 LPSTKGWKNAIRHTLSLRQRFVRLPDPGNPYRSWWTV 825
>SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 8.6
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = -3
Query: 374 KAGCWWLIRVSCSTFNFKGVHSILVGCPW 288
+ GC W++ C ++ ++VGC W
Sbjct: 20 ECGCGWVVAAECGCGGCGQLNVVVVGCGW 48
>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
Length = 383
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -3
Query: 254 SHIIIAFKTPRNGSIAHSLLALFKFL*ETKIPWHHNA**RIRHDHSITGLEN 99
+H+ K + + H+L A L T++P H + +H HS TG ++
Sbjct: 6 NHVFSRRKVAQEYQVTHALYARHNTLTRTRVPSHPCSLRTAQHPHSHTGTKS 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,707,062
Number of Sequences: 59808
Number of extensions: 445919
Number of successful extensions: 1038
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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