Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0126
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.46 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.5  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   9.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   9.9  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   9.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 483  NDEAGDLMTVPSGPILVSRTGA 548
            ND+  D +T P  P+ +SR G+
Sbjct: 1387 NDDGSDRLTSPPTPLSISRAGS 1408


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 499 SPASSFE*AGVLTHLKFENRLRSFRPQCL*SFALPDETVLKFYIDASYHEGN 344
           S A+S E   + TH +  ++LR  R     S  L DE   K +  ++  EGN
Sbjct: 220 STAASDEDISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGN 271


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 307 LSPLYPVPTID 275
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 307 LSPLYPVPTID 275
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 299 PIPSSDDRFARQNRYGPPSGFP 234
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRLRYIGPPTSFP 385


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 299 PIPSSDDRFARQNRYGPPSGFP 234
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 299 PIPSSDDRFARQNRYGPPSGFP 234
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 299 PIPSSDDRFARQNRYGPPSGFP 234
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 299 PIPSSDDRFARQNRYGPPSGFP 234
           P  S  ++  R    GPP+ FP
Sbjct: 353 PFVSIQEQIPRFRYIGPPTSFP 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,586
Number of Sequences: 438
Number of extensions: 3807
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)