Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0125
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      116   9e-27
07_01_0756 + 5819367-5820038,5820847-5821005                          115   1e-26
11_01_0395 + 2999855-2999920,3000605-3002191                           28   3.1  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    27   4.1  
07_03_0019 + 12498351-12498917                                         26   9.4  
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143...    26   9.4  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  116 bits (278), Expect = 9e-27
 Identities = 52/79 (65%), Positives = 67/79 (84%)
 Frame = +1

Query: 157 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 336
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I++  L P L DEV+KI PVQ
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE-TLVPGLKDEVMKITPVQ 96

Query: 337 KQTRAGQRTRFKAFVAIGD 393
           KQTRAGQRTRFKAFV +GD
Sbjct: 97  KQTRAGQRTRFKAFVVVGD 115


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  115 bits (277), Expect = 1e-26
 Identities = 53/79 (67%), Positives = 67/79 (84%)
 Frame = +1

Query: 157 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 336
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++  L P L DEV+KI PVQ
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE-QLVPGLKDEVMKITPVQ 99

Query: 337 KQTRAGQRTRFKAFVAIGD 393
           KQTRAGQRTRFKAFV +GD
Sbjct: 100 KQTRAGQRTRFKAFVVVGD 118


>11_01_0395 + 2999855-2999920,3000605-3002191
          Length = 550

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 244 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 363
           +F   +++ ++IDF L   L D  + I+P+    R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276


>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 160 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 294
           +  KE +P    G  V  G+    +++ + SLPIK++ +  FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849


>07_03_0019 + 12498351-12498917
          Length = 188

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 165 PERVGSCHQTRPSCSRR 215
           PE   SCH+ RP C RR
Sbjct: 62  PENEVSCHRFRPPCYRR 78


>04_03_0517 +
           16712487-16712570,16713715-16714059,16714149-16714301,
           16714889-16714972,16715426-16715479,16715552-16715647,
           16716163-16716258,16716941-16717086,16717650-16717799,
           16717889-16718018,16718128-16718787,16718881-16718979,
           16719058-16719210,16719323-16720054,16720338-16720640
          Length = 1094

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 208 REGKIDKLESIYLFSLPIKEF 270
           REGKI +LES+   +LP +EF
Sbjct: 717 REGKIARLESLMDGTLPTEEF 737


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,278,513
Number of Sequences: 37544
Number of extensions: 161950
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)