Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0125
(393 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 131 1e-31
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 125 9e-30
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 125 9e-30
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 125 9e-30
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 125 9e-30
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 123 4e-29
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 4.5
At5g47430.1 68418.m05844 expressed protein 27 6.0
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 6.0
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 6.0
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 6.0
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 27 6.0
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 26 7.9
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 131 bits (317), Expect = 1e-31
Identities = 57/77 (74%), Positives = 70/77 (90%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 342
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 343 TRAGQRTRFKAFVAIGD 393
TRAGQRTRFKAF+ +GD
Sbjct: 101 TRAGQRTRFKAFIVVGD 117
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 125 bits (302), Expect = 9e-30
Identities = 56/77 (72%), Positives = 67/77 (87%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 342
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 343 TRAGQRTRFKAFVAIGD 393
TRAGQRTRFKAFV +GD
Sbjct: 109 TRAGQRTRFKAFVVVGD 125
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 125 bits (302), Expect = 9e-30
Identities = 56/77 (72%), Positives = 67/77 (87%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 342
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 343 TRAGQRTRFKAFVAIGD 393
TRAGQRTRFKAFV +GD
Sbjct: 109 TRAGQRTRFKAFVVVGD 125
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 125 bits (302), Expect = 9e-30
Identities = 56/77 (72%), Positives = 67/77 (87%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 342
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 343 TRAGQRTRFKAFVAIGD 393
TRAGQRTRFKAFV +GD
Sbjct: 109 TRAGQRTRFKAFVVVGD 125
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 125 bits (302), Expect = 9e-30
Identities = 56/77 (72%), Positives = 67/77 (87%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 342
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 343 TRAGQRTRFKAFVAIGD 393
TRAGQRTRFKAFV +GD
Sbjct: 109 TRAGQRTRFKAFVVVGD 125
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 123 bits (297), Expect = 4e-29
Identities = 54/77 (70%), Positives = 67/77 (87%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 342
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 343 TRAGQRTRFKAFVAIGD 393
TRAGQRTRFKAFV +GD
Sbjct: 110 TRAGQRTRFKAFVVVGD 126
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 353 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 261
P R FC+G+ +S + PR+KS +S+ L
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 145 DHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 29
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 136 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 29
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 136 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 29
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 136 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 29
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 307 DEVLKIMPVQKQTRAGQRTRFKAFVAIGD 393
+ V+++ V K + G++ +F+A V +GD
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGD 177
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = +2
Query: 2 VYXS-PIVQQWRTLLQP 49
+Y S PI +QWRTL++P
Sbjct: 148 IYVSNPITKQWRTLIEP 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,316,650
Number of Sequences: 28952
Number of extensions: 128340
Number of successful extensions: 352
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -