Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0124
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    27   0.11 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.75 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    25   0.75 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   2.3  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   2.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.0  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   3.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.3  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   9.3  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 10/56 (17%), Positives = 28/56 (50%)
 Frame = +1

Query: 226 VEEFINDHIREVKNGFFCEYCNKYISGPTKKRLHILENTHINNKGIRNLERVGNNI 393
           V  F+N++++ ++  + C Y     +  +     ++ +TH+N   ++  + + N I
Sbjct: 164 VPNFVNEYVQAIEVLYICSYTVLIRNKISNLNTSLIHSTHLNGDIVKEHQNLHNKI 219


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 445 GHTCLICNIKFGDMEIH 495
           G++C  CNI FGD  ++
Sbjct: 470 GNSCQYCNIAFGDAVLY 486


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 262 KNGFFCEYCNKYISGPTKKRLHILENTHINNK 357
           K  F C+YCN+  +      +H  E TH + +
Sbjct: 77  KRQFICKYCNRQFTKSYNLLIH--ERTHTDER 106


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 346 YACFPKYGAFFWWAPICTCYS 284
           + C P Y  FF+ + I T YS
Sbjct: 79  FLCLPFYSYFFYLSYIYTTYS 99


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 346 YACFPKYGAFFWWAPICTCYS 284
           + C P Y  FF+ + I T YS
Sbjct: 35  FLCLPFYSYFFYLSYIYTTYS 55


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 85  HLQSPNTQTHPSASCK 100


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 85  HLQSPNTQTHPSASCK 100


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 85  HLQSPNTQTHPSASCK 100


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 85  HLQSPNTQTHPSASCK 100


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 85  HLQSPNTQTHPSASCK 100


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 41  HLQSPNTQTHPSASCK 56


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 85  HLQSPNTQTHPSASCK 100


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 85  HLQSPNTQTHPSASCK 100


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 610 HCTSSNEQSFPSSSCR 563
           H  S N Q+ PS+SC+
Sbjct: 85  HLQSPNTQTHPSASCK 100


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 202 KNLEANGFVEEFINDHIREVKNGFFCEYCNKYIS 303
           K L  NG  E+  N H     +G+   YC   I+
Sbjct: 153 KKLCNNGTCEDIGNSHRCHCSDGYSGSYCQTEIN 186


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 246 VIYKF--FHEAVSFQILLVAFFRNMSVSILLSG 154
           + Y F  F   V  Q +  AF  N+SV +LLSG
Sbjct: 144 ICYAFGKFSCKVMIQSVSFAFPINLSVPVLLSG 176


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 246 VIYKF--FHEAVSFQILLVAFFRNMSVSILLSG 154
           + Y F  F   V  Q +  AF  N+SV +LLSG
Sbjct: 377 ICYAFGKFSCKVMIQSVSFAFPINLSVPVLLSG 409


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 246 VIYKF--FHEAVSFQILLVAFFRNMSVSILLSG 154
           + Y F  F   V  Q +  AF  N+SV +LLSG
Sbjct: 377 ICYAFGKFSCKVMIQSVSFAFPINLSVPVLLSG 409


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 277 CEYCNKYISGPTKKRLHILENTH 345
           CE+C+   S   + + H+L +T+
Sbjct: 221 CEHCSMKFSDSNQLKAHVLIHTN 243


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  LNRNAILVGKVHSCCLVCGNY 150
           ++RN      + +C LVCG Y
Sbjct: 48  VSRNTDTYPTLETCRLVCGKY 68


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 381 HSFQVSDALIIDMRVFQNMEPFFGGPRY 298
           H F  SD    +  V Q      GGPR+
Sbjct: 47  HDFDNSDFFQSEHAVIQTHPSIGGGPRF 74


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 381 HSFQVSDALIIDMRVFQNMEPFFGGPRY 298
           H F  SD    +  V Q      GGPR+
Sbjct: 47  HDFDNSDFFQSEHAVIQTHPSIGGGPRF 74


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 287 QYSQKNPFLTSLMWSFINS 231
           QY  ++  +TS + SF+NS
Sbjct: 6   QYINRSELITSKIVSFVNS 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,878
Number of Sequences: 336
Number of extensions: 3969
Number of successful extensions: 23
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)