Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0124
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 31 0.15
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 31 0.20
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.62
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 29 0.82
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 28 1.1
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 2.5
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 27 3.3
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz... 26 4.4
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 26 4.4
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 26 4.4
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 4.4
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe... 26 5.8
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 26 5.8
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVK 264
C+VC F ++ H + K HKKNL + + I H +E +
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRK---MNQEIKKHAKEAQ 313
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 447 SNDSMPSCFGDSHIFESNYIISHS 376
S +S CF DS +F+ +Y ISHS
Sbjct: 345 SEESSEMCFADSPLFDPDYCISHS 368
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.62
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -1
Query: 350 LICVFSK-IWSLFLVGPDMYL-LQYSQKNPFLTSLMWSFINSSTKPLASKFFLWPFFEIC 177
+IC+ IW FL+ + + +++ F+ +L++SF++ +PL F +I
Sbjct: 693 VICILGVLIWQFFLLSRSKFAKINVIERSYFVFALLYSFLSFLQRPLGHLSLFSCFLQIL 752
Query: 176 LL 171
LL
Sbjct: 753 LL 754
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.82
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Frame = +1
Query: 187 KKGHKKNLEANGFVEEFINDHIREVKN---GFFCEYCNKYISGPT-----KKRLHILENT 342
+KG + + F + N H K GF CE C YI K H+L +
Sbjct: 40 EKGSAQAFYHSLFENDRDNSHTMNSKRDEAGFACEVCQIYIPNSKKINHFKSMTHLLSSQ 99
Query: 343 HINNK 357
HI+NK
Sbjct: 100 HISNK 104
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFV--EEFINDHIRE-VKNGFFCEYCNKYI 300
CL C F + +H+ K H + ++ E + D++ E + GF C CN+
Sbjct: 210 CLFCAASFSSFDTCKKHM-KASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTCNREF 268
Query: 301 SGPTKKRLHILENTH 345
R H+ + H
Sbjct: 269 KSLEAVRAHMQQKGH 283
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +1
Query: 442 VGHTCLICNIKFGDME---IHISTKEHLFKLVQTE 537
+G TCL CN +F +E H+ K H TE
Sbjct: 257 IGFTCLTCNREFKSLEAVRAHMQQKGHTSIAYDTE 291
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 457 LICNIKFGDMEIHISTKEHLFKLVQTEVKFATHKGLYRTMKE 582
++C KFG + S ++ + KL++T K+ L R M+E
Sbjct: 232 VVCRAKFGLVASSQSAQQIVEKLLKTATKYEALNSLKRIMEE 273
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.6 bits (56), Expect = 3.3
Identities = 29/117 (24%), Positives = 50/117 (42%)
Frame = -1
Query: 506 LVEM*ISISPNLILQIKQVCPTIPCQAALAIVTFLKATILFPTLSRFRMPLLLICVFSKI 327
LVE I+ S N+++ + ++C PC+ ++ L T++ F L + +K
Sbjct: 419 LVESLIAHSTNIMVDLVRICSHNPCRFRRNLINLLPEI----TVAHFEAEALDLKFVAK- 473
Query: 326 WSLFLVGPDMYLLQYSQKNPFLTSLMWSFINSSTKPLASKFFLWPFFEICLLASFSV 156
SL GP + + + N L+ SF +P + WP F L FS+
Sbjct: 474 -SLPSNGPFSSFIYHVKLNAIEHILLSSFEQKLHQP-----YQWPHFFAVLDHVFSI 524
>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +1
Query: 7 ILCIYLLSRVLSTAAGSHSRTSKMIPKLNRNAILVGKVHS------CCLVCGNYFPTEKD 168
++ + LLS +TA+ + K PK+ +N L G + + CC V F T D
Sbjct: 109 VMSVLLLSWCDTTASTVGRKWGKYTPKIAKNKSLAGSLGAFVCGVFCCYVYWGLFRTGPD 168
Query: 169 ANRHISKKGHKKNLEANGFVEEF 237
+ S+ NGF+ F
Sbjct: 169 SLAAQSRIPFPWLCLINGFIGAF 191
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 16 IYLLSRVLSTAAGSHSRTSKMIPKLNRNAILVGKVHSCCLVCGNY 150
I +LS V+S +H +LN +A +V V S L+C Y
Sbjct: 53 INILSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGY 97
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGH 198
C +CG EKDA H GH
Sbjct: 301 CTICGTGLVGEKDATAHALATGH 323
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 137 SVAITSPLRRMLTDIFRKKATRRIWKLTASWKNL 238
S+ PLR L DI + + R W + ASW N+
Sbjct: 493 SLNAREPLRVTLEDIEQIETKGRWWLVGASWNNV 526
>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 439 IVGHTCLICNIKFGDMEIHISTKEHLFKLVQTEVKFATHKG 561
++GH LIC D + + +++L+Q +K+A G
Sbjct: 166 VIGHFDLICLFAPEDAKEVFKNSKSVWELIQRNIKYAVSYG 206
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 220 GFVEEFINDHIREVKNGFFCEYCNKYISGPTK 315
GFV+E+ ++ + N YCN SG T+
Sbjct: 98 GFVQEYRSEQSLKALNNLVPHYCNVIRSGKTE 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,619
Number of Sequences: 5004
Number of extensions: 69352
Number of successful extensions: 263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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