Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0124
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 31 0.85
07_03_1328 + 25838952-25839155,25839412-25839959,25840167-25840482 30 1.5
06_01_0929 - 7171395-7171676,7172019-7172219,7172438-7172524,717... 30 1.5
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 29 3.4
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 29 3.4
03_05_0978 - 29358778-29358857,29359149-29359289,29359375-293594... 29 3.4
01_06_1495 + 37769982-37771496 29 3.4
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 29 4.5
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392... 28 6.0
09_02_0392 + 8504856-8505041,8505099-8505143,8505836-8506404,850... 28 6.0
01_06_1768 + 39771025-39771241,39771284-39771513,39772165-397722... 28 6.0
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 28 7.9
06_02_0178 + 12652654-12652877,12652964-12653140,12653141-126532... 28 7.9
02_01_0422 - 3084940-3087072 28 7.9
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 28 7.9
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 244 DHIREVKNGFFCEYCNKYISGPTKKRLHILENTHINNKG 360
+H + NGF C+YC++ SG RL I H+ KG
Sbjct: 10 EHGESIGNGFHCKYCHQQKSGGRATRLKI----HLAGKG 44
>07_03_1328 + 25838952-25839155,25839412-25839959,25840167-25840482
Length = 355
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 182 FRKKATRRIWKLTASWKNL*MTTLGRSKTDSSVN---TVTSTYRGPPKKGSIFWKTRISI 352
++ + TRRIW L A+W R SV + ++ G PKKG +T I +
Sbjct: 248 YKAQYTRRIWNLVATWVGFHQLEPRRWGVAQSVKDWWEMLASVSGVPKKG---LRTLILL 304
Query: 353 IRASETWKE 379
I E WKE
Sbjct: 305 I-VWEVWKE 312
>06_01_0929 -
7171395-7171676,7172019-7172219,7172438-7172524,
7172973-7173023,7173883-7173987,7174074-7174185,
7174284-7174366,7174434-7174557,7174822-7174973
Length = 398
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 133 LVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFIN-DHIREVKNGFFCEYCN 291
+VCG FP EK+ + + K K E + F E+ D++ + +N Y N
Sbjct: 269 VVCGESFPAEKEKLQSVEAKILTKRAELSKFETEYREIDNLLKERNEIHASYTN 322
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLE 213
CL C YF +E H K HKK ++
Sbjct: 66 CLHCDRYFASESVKEEHYRSKRHKKRIK 93
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 229 EEFINDHIREVKNGFFCEYCNKYISGPTKKRLHILENTHINNK 357
E+ I ++E++ FFC CNK + H+ H + K
Sbjct: 188 EQKIRSEVKEIQKVFFCSLCNKQYKLAHEFESHLSSYDHNHRK 230
>03_05_0978 -
29358778-29358857,29359149-29359289,29359375-29359468,
29360931-29361170,29361438-29361488,29361850-29361936,
29362189-29362256,29362393-29362447,29362569-29362630,
29362751-29362951,29363043-29363202,29363294-29363482
Length = 475
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -1
Query: 347 ICVFSKIWSLFLVGPDMYLLQYSQKNPFLTSLMWSFINSSTKPLASKFFLWPFFEIC 177
I V +WS FLV LQ + N S + IN P+A FLW ++C
Sbjct: 257 ILVLMTVWSSFLV------LQIFKNNSQSCSTFYWVINILQVPVALSVFLWEGVQLC 307
>01_06_1495 + 37769982-37771496
Length = 504
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 70 SKMIPKLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGH 198
S ++ +L + IL H C L+CG F ++DAN + +GH
Sbjct: 247 SYVVLQLEKEEILAPHTHFC-LICGKGF--KRDANLRMHMRGH 286
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Frame = +1
Query: 37 LSTAAGSH-SRTSKMIPKLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLE 213
+STA+ SH S + ++P + + CCL G + H KK K L+
Sbjct: 96 ISTASPSHVSHDAHLVPTNVAGKLKMIMQPYCCLHYGQVYDVTL-YRIHEMKKKLKDELD 154
Query: 214 ANGFVEEFIN-------------DHIREVKNGFFCEYCNKYIS 303
N ++ ++ D + + N F C++CN+ +S
Sbjct: 155 GNYMIQNYVCPNCERRYSSLNALDLVSHIDNNFHCKHCNEELS 197
>11_06_0657 +
25938382-25938443,25938511-25938718,25939222-25939268,
25939473-25939805,25940529-25940613,25940689-25940884,
25941012-25941182,25941261-25941318,25941429-25941657,
25942296-25943183
Length = 758
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 197 TRRIWKLTASW 229
TRRIW+LTASW
Sbjct: 658 TRRIWRLTASW 668
>09_02_0392 +
8504856-8505041,8505099-8505143,8505836-8506404,
8509267-8509585
Length = 372
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 97 NAILVGKVHSCCLVCGNYFPTEKD-ANRHISKKGHKKN 207
N ++ GK+ C +C NY + H+ ++G K+N
Sbjct: 118 NVVVSGKIKCPCSLCRNYVSHRRQMVEMHLCREGFKEN 155
>01_06_1768 +
39771025-39771241,39771284-39771513,39772165-39772245,
39772468-39772824,39772942-39773046
Length = 329
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 134 LSVAITSPLRRMLTDIFRKKATRRIWKLTASWKNL*MTTLGRSKTDSSVNTVTSTYRGPP 313
+SV P+R T + R+K R +W +T + +N +T S +S T+ T+RG P
Sbjct: 144 VSVKYKDPVR---TFVGREKYKRPLW-ITKALENPTVTVQEMSMQSTSNLTIKWTFRGKP 199
Query: 314 K 316
K
Sbjct: 200 K 200
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 214 ANGFVEEFINDHIREVKNGFFCEYCNKYISGPTKKR 321
A GFV E ++ +V +FCE N+ + P R
Sbjct: 455 AEGFVSEDCGMNLEDVAESYFCELVNRSLVQPVDIR 490
>06_02_0178 +
12652654-12652877,12652964-12653140,12653141-12653214,
12653424-12653530,12653637-12653792,12653933-12654019,
12654247-12654344,12654467-12654554,12654810-12654911
Length = 370
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 364 GCPYY*YACFPKYGAFFWWAPICTCY-SIHRRIRF*P 257
GCP CF + A+ WW P + I R I+F P
Sbjct: 264 GCPLVPVFCFGQSYAYKWWRPKGKLFVKIARAIKFTP 300
>02_01_0422 - 3084940-3087072
Length = 710
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +1
Query: 205 NLEANGFVEEFINDHIREVKNGFFCEYCNKYISG---PTKKRLHILENTHINNKGIRNLE 375
NL N E I I +KN + +++G P LH L ++++ ++
Sbjct: 575 NLSFNNLNRE-IPQSISNLKNLMVLDLSYNHLTGAIPPALVNLHFLSEFNVSHNDLKGSV 633
Query: 376 RVGNNIVAFKNVTIA--KAAWHGIVGHTCLICNIKFGDMEIHISTKEHLFKLV 528
+G F + + A I+ H C + + D+ STKE++ K++
Sbjct: 634 PIGGQFSTFPSSSFAGNPELCSPILLHRCNVAEV---DLSSPNSTKEYINKVI 683
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 91 NRNAILVGKVHSCCLVCG 144
N N + GK HSCCL CG
Sbjct: 130 NDNNQVCGKRHSCCLRCG 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,793,663
Number of Sequences: 37544
Number of extensions: 398145
Number of successful extensions: 1078
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -