Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0124
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106573-10|AAC78155.2| 862|Caenorhabditis elegans Gex interact... 33 0.14
Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical p... 31 0.57
Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical p... 31 1.00
Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical pr... 31 1.00
Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical pr... 30 1.3
U13642-4|AAG00043.2| 687|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC006748-2|AAF60515.2| 215|Caenorhabditis elegans Hypothetical ... 30 1.7
AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine re... 29 3.0
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 28 7.0
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 28 7.0
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 27 9.3
AL132851-2|CAB60412.1| 180|Caenorhabditis elegans Hypothetical ... 27 9.3
AF106573-8|ABC48249.1| 309|Caenorhabditis elegans Hypothetical ... 27 9.3
AF039047-2|ABR92603.1| 403|Caenorhabditis elegans Serpentine re... 27 9.3
AF039047-1|AAB94224.2| 403|Caenorhabditis elegans Serpentine re... 27 9.3
AC084197-1|AAG23478.1| 328|Caenorhabditis elegans Serpentine re... 27 9.3
>AF106573-10|AAC78155.2| 862|Caenorhabditis elegans Gex interacting
protein protein 12 protein.
Length = 862
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +1
Query: 118 VHSCCLVCGNY-FPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVKNGFFCEYCNK 294
VH CL GN F + + H KKGHK N A+G +E IN + + + N+
Sbjct: 212 VHQQCL--GNKSFNAQAGVHGHAFKKGHKDNKNASG--KEVINSSLVQKHDAIKSRNLNQ 267
Query: 295 YISGPTKKRLHILENTHINNKGIRNLERVGNN 390
SG ++N ++ R R +N
Sbjct: 268 SFSGFPTHETSSMKNQQQKSRNDRKKSRGSSN 299
>Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical
protein F55C5.11 protein.
Length = 205
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 25 LSRVLSTAAGSHSRTSKMIPKLNRNAILVGKVHSCCLV-CGNYFPTEKDANRHISKKGHK 201
L R ++ S S K K++ +A+ + ++H+C + CG F + + NRH S K
Sbjct: 103 LKRRVACDICSKSFCDKGALKIHTSAVHLREMHTCTVTGCGKQFSSRRSRNRHSSNNNPK 162
Query: 202 KNL 210
++
Sbjct: 163 LHM 165
>Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical
protein K12G11.4 protein.
Length = 351
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +1
Query: 178 HISKKGHKKNLEANGFVEEF----INDHIREVKNG 270
HISK+ H +NL A FV+ F I HIR++ NG
Sbjct: 206 HISKEDHCRNLGAEWFVDAFDTPDIVAHIRKLTNG 240
>Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 30.7 bits (66), Expect = 1.00
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 58 HSRTSKMIPKLNRNAIL-VGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEE 234
H + + ++ L+R+A L K CC CG F A+ HI + + L+ + F E
Sbjct: 221 HGQYANLLNHLSRHARLHASKKQYCCPKCGASFTRRYLASTHIKEVHGEPKLQPHDFAAE 280
Query: 235 FINDHIR 255
++ R
Sbjct: 281 LREEYRR 287
>Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 30.7 bits (66), Expect = 1.00
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 58 HSRTSKMIPKLNRNAIL-VGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEE 234
H + + ++ L+R+A L K CC CG F A+ HI + + L+ + F E
Sbjct: 221 HGQYANLLNHLSRHARLHASKKQYCCPKCGASFTRRYLASTHIKEVHGEPKLQPHDFAAE 280
Query: 235 FINDHIR 255
++ R
Sbjct: 281 LREEYRR 287
>Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical
protein F58G1.2 protein.
Length = 445
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +1
Query: 253 REVKNGFFCEYCNKYISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAW 432
R +GF C CN+ P K R H + H+ ++ + ++ VTI +
Sbjct: 309 RGYHSGFRCPDCNQKFLTPRKLRKH-RKMAHVFSRTFQ-CHFCEEFFISDTAVTIHERVH 366
Query: 433 HGIVGHTCLICNIKFGD-MEIHISTKEH 513
GI+ C +C+ + +++ TKEH
Sbjct: 367 TGILKFECTVCDFRASRYLQMEEHTKEH 394
>U13642-4|AAG00043.2| 687|Caenorhabditis elegans Hypothetical
protein ZC395.8 protein.
Length = 687
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 139 CGNYFPTEKDANRHISKKGHKKNLE--ANGFVEEFIN 243
C F T+++ N H SK GHK++ + N ++++ I+
Sbjct: 36 CDMGFYTQQELNAHCSKHGHKRSFQKTVNPYIDKMIS 72
>AC006748-2|AAF60515.2| 215|Caenorhabditis elegans Hypothetical
protein Y39A3B.3 protein.
Length = 215
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 109 LRSHSCSASVSSLRFVNVNQLLYLKHEIIDKYTE 8
++ C S LRF Q+ YLK+EII+ ++E
Sbjct: 66 MKQDICGHGASELRFTLKTQIKYLKNEIINFFSE 99
>AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine
receptor, class w protein40 protein.
Length = 363
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 297 VLVTVFTEES----VFDLPNVVIYKFFHEAVSFQILLVAFFRNMSVSILLS 157
+L F+EES VF V +F+ + VSF I V FF N+ I+LS
Sbjct: 10 ILFENFSEESRNFWVFIYLKVRCIRFYADFVSFTICFVGFFANIVHLIILS 60
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGP 309
C VCG F + + RH+ +K + N +I+ K+ + C C K +
Sbjct: 194 CQVCGESFASRQSMLRHVGRKHPDAKNDPNVTAVRYIS--AESPKHPYACIECGKRFTTV 251
Query: 310 TKKRLH 327
T H
Sbjct: 252 TALSTH 257
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGP 309
C VCG F + + RH+ +K + N +I+ K+ + C C K +
Sbjct: 312 CQVCGESFASRQSMLRHVGRKHPDAKNDPNVTAVRYIS--AESPKHPYACIECGKRFTTV 369
Query: 310 TKKRLH 327
T H
Sbjct: 370 TALSTH 375
>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
F37A4.4 protein.
Length = 1163
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 460 ICNIKFGDMEIHISTKEHLFKLVQTEVKFATHKGLYRTMKENSVHCLTCN--EVIKTATQ 633
+CN K+G+ +H++T+ LV+ +K + + + + N E K +
Sbjct: 852 VCN-KYGNTALHVATRRGYQNLVEILIKHGADRSFLNPQNKTAEQMIPVNYQETHKEKIE 910
Query: 634 IFVSLHFSHPKHKQ 675
F S+ + K+++
Sbjct: 911 RFKSIESIYNKYRK 924
>AL132851-2|CAB60412.1| 180|Caenorhabditis elegans Hypothetical
protein Y53H1B.4 protein.
Length = 180
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 142 GNYFPTEKDANRHISKKGHKKNLE---ANGFVE-EFINDHIREVKNGFFCEY 285
G F E NR +S KG + + F++ E I+ R + GF+CEY
Sbjct: 88 GIMFMVENHMNRFVSVKGSQDETGYEISQCFLQFETISPKSRHIVGGFYCEY 139
>AF106573-8|ABC48249.1| 309|Caenorhabditis elegans Hypothetical
protein F52D2.8b protein.
Length = 309
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 109 VGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVKNGFFCE-- 282
+ K H ++ GN+ K + ++ KGHKK ++ + F+E D +K+ E
Sbjct: 66 IRKDHIDLILDGNWIRYRKRGST-VTYKGHKKQIKGDNFMETAFKDLKTSLKHVSKLEIY 124
Query: 283 YC--NKY 297
YC N+Y
Sbjct: 125 YCIPNRY 131
>AF039047-2|ABR92603.1| 403|Caenorhabditis elegans Serpentine
receptor, class r protein4, isoform b protein.
Length = 403
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 379 LFPGFGCPYY*YACFPKYGAFFWWAPICTCYSIHRRIRF 263
LF G P Y Y+ FP AF W TC + + +F
Sbjct: 174 LFSGAVVPAYKYSLFPAL-AFIVWMTTSTCLAFYALFQF 211
>AF039047-1|AAB94224.2| 403|Caenorhabditis elegans Serpentine
receptor, class r protein4, isoform a protein.
Length = 403
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 379 LFPGFGCPYY*YACFPKYGAFFWWAPICTCYSIHRRIRF 263
LF G P Y Y+ FP AF W TC + + +F
Sbjct: 174 LFSGAVVPAYKYSLFPAL-AFIVWMTTSTCLAFYALFQF 211
>AC084197-1|AAG23478.1| 328|Caenorhabditis elegans Serpentine
receptor, class v protein24 protein.
Length = 328
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +1
Query: 295 YISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICNIK 474
Y PT L +L++T+ + ++ + V +N +A +V TC++C++
Sbjct: 131 YWGVPTLISLVVLKDTNFKYDSLESMSIIAEQEVIKRNTLMALI----VVSLTCILCSLA 186
Query: 475 FGDMEIHI 498
+G + +I
Sbjct: 187 YGALFYYI 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,806,130
Number of Sequences: 27780
Number of extensions: 376621
Number of successful extensions: 1287
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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