Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0124
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    31   0.013
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    28   0.094
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.38 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.88 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   0.88 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.88 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    24   1.5  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   2.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 468 IADQAGMSNDSMPSCFGDSHIFESNYIISHSFQVSDALIID 346
           IA   G+   +  S + D  + E+N  + HSFQ+ +  I+D
Sbjct: 321 IATHMGLDTRTSTSLWKDKAMIEANVAVLHSFQMKNVTIVD 361


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 27.9 bits (59), Expect = 0.094
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +1

Query: 271 FFCEYCNKYISGPTKKRLHILENTHI--NNKGIRNL-ERVGNNIVAFKN 408
           F CE CNK ++  T+ R HI +N H   + + I N+ +RV +++ + +N
Sbjct: 3   FRCEPCNKILTSLTRLRRHI-QNVHTRPSKEPICNICKRVYSSLNSLRN 50


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 16/83 (19%), Positives = 38/83 (45%)
 Frame = +1

Query: 385 NNIVAFKNVTIAKAAWHGIVGHTCLICNIKFGDMEIHISTKEHLFKLVQTEVKFATHKGL 564
           N ++ ++N   A  ++H +  HT    + K  D + +++ KE   K+    +   TH   
Sbjct: 209 NTLIIYQN---ADDSFHRLSSHTLNHNSDKMSDQQENLTLKEVDNKVYGMALSPVTHNLY 265

Query: 565 YRTMKENSVHCLTCNEVIKTATQ 633
           Y +    +++ +    ++K+  Q
Sbjct: 266 YNSPSSENLYYVNTESLMKSENQ 288


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 407 FLKATILFPTLSRFRMPLLLICVFSKIWSLFLVGPDMY 294
           F+ +  +F  +  F MP+L+I  F +    + +G D+Y
Sbjct: 95  FIVSLAIFDIIMAFEMPMLVISSFMERMIGWEIGCDVY 132


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +1

Query: 97  NAILVGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVKNGFF 276
           N +   KVH    +CG    ++ D             L ++GF + F+   I+ +KN  F
Sbjct: 269 NGLDTSKVHIIDSICG--IDSKPDYRELTEYSVTSVRLISSGFFDNFVTVQIQPLKNELF 326


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 407 FLKATILFPTLSRFRMPLLLICVFSKIWSLFLVGPDMY 294
           F+ +  +F  +  F MP+L+I  F +    + +G D+Y
Sbjct: 95  FIVSLAIFDIIMAFEMPMLVISSFMERMIGWEIGCDVY 132


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 256 EVKNGFFCEYCNKYISGPTKKRLHILENT 342
           + K  F C+YC K        ++HI  +T
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHIRTHT 40


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 133 LVCGNYFPTEKDANRHISK 189
           L  G YFP+   AN H SK
Sbjct: 40  LFVGTYFPSLIGANEHYSK 58


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 456 AGMSNDSMPSCFGDSHIFESN 394
           +G+ N++ P C    H+F+ N
Sbjct: 144 SGIINNTQPMCSPKLHVFDLN 164


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 139 RQDSRSGLSPLRSHSCSASVSSL 71
           ++DS   L+P R HS +AS   L
Sbjct: 397 QEDSEEHLTPKRFHSRAASKEDL 419


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 139 RQDSRSGLSPLRSHSCSASVSSL 71
           ++DS   L+P R HS +AS   L
Sbjct: 397 QEDSEEHLTPKRFHSRAASKEDL 419


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 385 NNIVAFKNVTIAK 423
           NNI AF+NV + K
Sbjct: 5   NNIAAFQNVVLVK 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,595
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)