Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0120
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 36 0.005
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 32 0.067
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 31 0.12
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 31 0.15
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 30 0.27
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 30 0.27
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 29 0.47
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 0.58
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.62
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 29 0.62
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 28 1.1
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 28 1.4
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 1.4
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 27 1.9
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 2.5
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 27 2.5
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 2.5
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 27 3.3
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.4
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.4
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 26 5.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 7.7
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 25 7.7
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +2
Query: 311 DDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 490
+D Y+Y + E E+E ++K FSSV Q E LS + LI+E L +AKF + R +
Sbjct: 410 NDLYWYLVVEIEDEPVSKLFSSVMFLFQKE-LSKSVEGRLIRETLSAQAKFVEKLLRISK 468
Query: 491 S 493
S
Sbjct: 469 S 469
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 32.3 bits (70), Expect = 0.067
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +2
Query: 419 KNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETS 598
KN+++++ ++A + + ER K + EE+KD R + +++ ++
Sbjct: 5 KNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKR---LRLSENIPATIESKRVY 61
Query: 599 VETFTAEDPPSNEIWQRLKDQE 664
ET ED P E+ LKD E
Sbjct: 62 DETI-IEDKPDEELQAELKDDE 82
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 31.5 bits (68), Expect = 0.12
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Frame = +2
Query: 302 VDSDDNYFYALPEDEEEYLT--KEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLV 475
VDSDDN + ++EEE T KE +Q E + MT EL + +L + L
Sbjct: 546 VDSDDNIELSDSDEEEEKATARKESDEKGSSSQKELVDRMT--ELASQSILTPNDLKKLE 603
Query: 476 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVE 604
+ E++ + R+ S R + D + R ++ E
Sbjct: 604 ELREQAGVDRLVNGPKRSLKRPDDAVEADEIEGPRKKAKNDRE 646
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 31.1 bits (67), Expect = 0.15
Identities = 30/153 (19%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Frame = +2
Query: 239 PENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSN-- 412
P++A+ + SA++ +S V D+ F+ + + E ++ + E ++ +RLS
Sbjct: 524 PKDAYAEYKGESAKSSESDLVVSDDEEDFFKVSKVANESISSNHEKLME-SESDRLSKKW 582
Query: 413 -------MTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMV 571
K+ I LL + + V + + ED++NS+D + + S+
Sbjct: 583 ENPQLLAQLKSRFITGSLLDSIEGQEEVSQDDEEGDFEDLEDEENSSDNEMEESSGSSVT 642
Query: 572 TDRDTSETSVETFTAEDPPSNEIWQ-RLKDQED 667
+ + S V+ T + + + + RL+ +E+
Sbjct: 643 AENEESADEVDFQTEREENARKKEELRLRFEEE 675
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 30.3 bits (65), Expect = 0.27
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 11/147 (7%)
Frame = +2
Query: 260 LQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQE 439
L+ P RD+ F + F + +D + + + S YE S T+ E +E
Sbjct: 148 LEAPKILKRDAMFKESWKNKCFISPQKDNQGFSKSKHLSTYEGETENGFSTSTEEEEEEE 207
Query: 440 YLLLEAKF-ENL-------VKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSET 595
++ A + +NL ER + + D+ + D + DS V D D +
Sbjct: 208 EDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDERSDDDFLLGLISSDSSVDDHDNEQD 267
Query: 596 SVETFTAE---DPPSNEIWQRLKDQED 667
V+ E D S+E+ L Q D
Sbjct: 268 DVDLIGWECFFDDSSDEL-NTLSHQAD 293
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.3 bits (65), Expect = 0.27
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Frame = +2
Query: 218 MEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQC 397
+E P+P + + S+F+ D+D NY PED+E + +E V + +
Sbjct: 23 IESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLK-PEDDE--VDEEVVPVKK--KP 77
Query: 398 ERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDR--DASIADKDSMV 571
+ S K + + ++ E + +E+ K + K S DA D D +
Sbjct: 78 SKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLS 137
Query: 572 TDRDTSETS 598
D + SE+S
Sbjct: 138 LDEEESESS 146
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 29.5 bits (63), Expect = 0.47
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Frame = +2
Query: 374 SVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIA 553
S Y+D N+ K L++EY +E F + KR E ++ +E+KD+ D+ ++A
Sbjct: 922 SDYKDGLKVHEYNVIKG-LLEEYYNVEKLFSGINKREEDVILRLRDENKDD-VDKVIALA 979
Query: 554 DKDSMVTDRDTSETSVETFTAEDPPS------NEIWQRLKDQEDQI 673
S + ++ ++ +P + N+I ++L D + ++
Sbjct: 980 LSHSRIGSKNNLLITILDLMKSEPSTFVSLYFNDILRKLTDLDSRV 1025
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 24.2 bits (50), Expect(2) = 0.58
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 506 MEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEI-WQRLKDQED 667
++ K + + +SIA DS R+T + + T + DP S+ W +D
Sbjct: 273 LDRKKVDEVEEHSSIAKLDSEEKIRETKKKNSSTSLSPDPTSDNFEWGSWVSSQD 327
Score = 23.4 bits (48), Expect(2) = 0.58
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 332 LPEDE--EEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKM 499
LPE + T + SS+ + SN++ NE+ ++Y A N V + K+
Sbjct: 177 LPEQSPLSNFSTTKISSINVPSDILDFSNLSSNEIPKDYSSSTALLNNTVAVKQDHKL 234
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.62
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 227 HKPEPENAFNILQTPSARTRDSSFSVDSDDNY-FYALPEDEEEYLTKEFSSVYEDAQCER 403
+ P +N F TP++R + ++ + FY + E+ E++ T E +YE R
Sbjct: 331 YSPWYKNNFGA-STPASRVSRNPYTAAQPRKHTFYQMYENIEKFFTTENGGLYESIVSGR 389
Query: 404 LSNMTKN 424
LS+ +++
Sbjct: 390 LSHFSRS 396
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 29.1 bits (62), Expect = 0.62
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 419 KNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSM----VTDRDT 586
KN+ + + +K +N+ K ++R+ + E + N+T D+ K + + +R+
Sbjct: 5 KNQKSPKPKVASSKLKNIKKSSKRNNSQSSTEPRKNATSLDSKKTTKKGVALPEIAEREL 64
Query: 587 SETSVETFTAEDPPS 631
++ +E F E+P S
Sbjct: 65 TQEDIEFFN-ENPSS 78
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/95 (24%), Positives = 41/95 (43%)
Frame = +2
Query: 284 RDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKF 463
R SS V S N+ L ++ S YED + E + +++ + + + +
Sbjct: 65 RTSSLPVPSSSNFKERLNNIGGLKRSRTLESSYED-ETETANKLSR---VSSLVSVIRQT 120
Query: 464 ENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSM 568
+ K ER + EE DN D D I+ ++S+
Sbjct: 121 IDRKKSLERRVREEQEEKTDNEDDNDVEISTQESL 155
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 218 MEIHKPEPENAFNILQTPSARTRDSS 295
+E + E +NAFNILQT S RD +
Sbjct: 3 LEENVKEAKNAFNILQTLSVEDRDDA 28
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 485 ERSKMKRMEEDKDNSTDRDASIADKDSMVT----DRDTSETSVETFTAEDPPSNE 637
ERS ++ DK TD+ +IA+K S + ++ +SET E + P + +
Sbjct: 310 ERSTSRKPSADKAEKTDKTDAIAEKVSDIRLGDGEKKSSETDSEVAATKTPATED 364
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = +2
Query: 476 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSV-------ETFTAEDPPSN 634
KRT R K +E S D DKDS D +E ++ E F PPS
Sbjct: 145 KRTARPKKPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKFADKSQEEFNENGPPSG 204
Query: 635 E 637
+
Sbjct: 205 Q 205
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = +2
Query: 344 EEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKD 523
E+EY EFS+ ED + E + N + + E + + + E R S+ E++
Sbjct: 63 EDEY--SEFSN--EDDEAE-IDNSFADSIPNEPEIPDMQDE--YSRDSHSQQSVEEQNNT 115
Query: 524 NSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEI 640
+TD DAS+ + D + + + + P NE+
Sbjct: 116 TNTDEDASVNEFSVAADISDVNTLGKDNSESTEEPVNEV 154
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +2
Query: 488 RSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQED 667
+ K ++ D + A I D+ D + E E AED NE+ Q + D ED
Sbjct: 104 KEKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKDELEEERI-AEDIAQNEVEQNIDDVED 162
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 224 IHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCER 403
I KP L+T +SS +V+ D+N + P+ + + K S + + ++
Sbjct: 93 IEKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQK 152
Query: 404 LSNMTKNEL 430
+ + KN+L
Sbjct: 153 V--LKKNKL 159
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 434 QEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSM 568
QE LLE K E +K++ M+E DN T +A DK+S+
Sbjct: 10 QEKELLEMKERVAEMEAEAAKLRAMQEQLDNET--EALRNDKESI 52
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 584 YLCQSPYYLYLQSTHLCQCYCLYLPP 507
Y + Y LY T+L + C Y+PP
Sbjct: 360 YTLRRNYLLYAMDTYLPKSVCSYIPP 385
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 293 SFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFEN 469
SFS ++ YF +LP +E+ T+ S +++ C+R + + L+ +L + + +
Sbjct: 163 SFSFSNNTQYFASLP--QEDVCTENLSPLFKLLPCKRKAGIA--SLLDSHLFFDTDWHS 217
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 584 YLCQSPYYLYLQSTHLCQCYCLYLP-PFVSSSSAQSFLQGFQTLPLTEDILV*VRFLSYL 408
Y C +P Y+ + +C L L P V+ S L + TLP+ D V+ LSYL
Sbjct: 141 YCCTNPS-AYVSALLVCLKGMLQLDMPHVNILSKADLLCTYGTLPMKLDFFTEVQDLSYL 199
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +2
Query: 323 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 502
F+ L E+ + + + + + N K EL Q+ L + +K T+RS K
Sbjct: 356 FHKLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGNK 415
Query: 503 RM 508
R+
Sbjct: 416 RL 417
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.4
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Frame = +2
Query: 383 EDAQCERLS-NMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKD--NSTDRDASIA 553
E+ Q E S NEL E L +K E L+ K K E+KD ++ S+
Sbjct: 904 ENLQRESASLKQINNELESELLEKTSKVETLLSEQNELKEKLSLEEKDLLDTKGELESLR 963
Query: 554 DKDSMVTD-----RDTSETSVETFTAEDPPSNEIWQRLKDQEDQIREL 682
+ ++ V + ++ ET +D +++ + + D + +I+E+
Sbjct: 964 ENNATVLSEKAEFNEQCKSLQETIVTKDAELDKLTKYISDYKTEIQEM 1011
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 485 ERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPP 628
E + K ++DKD+ D + + DK + D+S T + PP
Sbjct: 185 EEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +3
Query: 507 WRKIKTIALTEMRRL---QIKIVW*LTEIHLRLLLKHLPQRI-RLQT---KSGNALKTKK 665
WR + + L + +RL Q+K++ L HL+++L+H Q++ ++Q S NA T K
Sbjct: 373 WRDV--LELGQSQRLPPEQLKLIGMLYRKHLQIILQHRQQQLNKIQNARMNSQNAPNTNK 430
Query: 666 I 668
+
Sbjct: 431 L 431
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 272 SARTRDSSFSVDSDDNYFYALPEDEEEYLTKE-FSSV 379
S ++D+ S F +PEDE+E+L K FSSV
Sbjct: 36 STSSKDTDTSSHMTHFGFKDVPEDEKEHLVKNVFSSV 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,307
Number of Sequences: 5004
Number of extensions: 47242
Number of successful extensions: 199
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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