Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0120
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 35 0.069
05_01_0372 - 2913518-2916562,2916674-2917528 34 0.091
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 33 0.16
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822... 32 0.37
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 32 0.48
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 31 0.84
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 31 1.1
05_07_0352 - 29475855-29476330,29476421-29477165,29477689-294780... 31 1.1
05_07_0357 - 29533496-29533556,29533638-29533770,29533857-295339... 30 2.0
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 29 2.6
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.4
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 29 4.5
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025... 29 4.5
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 29 4.5
04_01_0127 + 1368763-1369276,1385539-1385742,1386221-1386444,138... 28 7.9
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 28 7.9
>10_08_0614 - 19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 34.7 bits (76), Expect = 0.069
Identities = 26/115 (22%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Frame = +2
Query: 344 EEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKD 523
E+E+L +E+ +++A+ + LS +N+L ++L+ + ++ + R D
Sbjct: 869 EKEHLEEEYKKKFDEAKKKELS--LENDLAGMWVLVAKLKRGALGISDLNVDDRSINLAD 926
Query: 524 NSTDRDASIADKDSMVTDRDTSETSVETFTAED---PPSNEIWQRLKDQEDQIRE 679
+ + ADK+ V ++ S+ +V++ TAE+ P + RLK + +++E
Sbjct: 927 ITNGTKENKADKNVAVVEKQLSDNTVKSLTAEEYRNPEFEPLLVRLKAKIQEMKE 981
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 34.3 bits (75), Expect = 0.091
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +2
Query: 266 TPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYL 445
+P + +D DD EDEEEY +Q RL+ KN EY
Sbjct: 915 SPDQGGNEGDSDIDLDDYSDIEQDEDEEEYDQLPPFKPLTKSQLARLTKEQKNAYFDEY- 973
Query: 446 LLEAKFENLVKRTERSKMKRMEE-DKDNSTDRDA 544
+ + + L K+ + +++R++E K TD DA
Sbjct: 974 --DYRVKLLQKKQWKDEIRRLKEMKKRGKTDMDA 1005
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/92 (25%), Positives = 42/92 (45%)
Frame = +2
Query: 236 EPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNM 415
E + F+ ++ P R R+ F ++Y L + K + +D +C RL +
Sbjct: 459 EDDERFSAVERP--REREDLF-----ESYLMELQKKTSTQWRKVQERLEDDERCSRLEKI 511
Query: 416 TKNELIQEYLLLEAKFENLVKRTERSKMKRME 511
+ E+ QEY+ K E KR + +++R E
Sbjct: 512 DRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQE 543
>08_01_0841 +
8223768-8223871,8227749-8228745,8228779-8228828,
8228896-8230396
Length = 883
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 458 KFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNE 637
+F+NL+ TE SKM ED+++ D D D+ ++ E ++ T P +
Sbjct: 334 RFKNLILVTENSKM--THEDREDFEDLDLKELDRLKILRKCRGLELAIGTVANNHPMLKD 391
Query: 638 IW----QRLKD 658
IW QR KD
Sbjct: 392 IWKVMIQRYKD 402
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 31.9 bits (69), Expect = 0.48
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 275 ARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQC--ERLSNMTKNELIQEYLL 448
A+ +++ +DSD ++ +P+D EE L S E + C +R S M ++ + L+
Sbjct: 479 AQHEENTLPLDSDISFLKLVPDDAEETLRPSDSHPLEVSACIPDRTSGMEIEDVPEPDLI 538
Query: 449 LEAK--FENLVK-RTERSKMKRMEEDKDNSTDRDAS 547
+ K E L + TE + +E + ST D S
Sbjct: 539 EKFKEDVEKLTEPETENVAEQPLEVSVEQSTQTDTS 574
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 182 KTHAPFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEE 352
K HA N + + KP F + RT +D++D+YF +L E++E+
Sbjct: 164 KWHASVNKHWVALVYKKPHVAYCFACEECYFIRTEHFGVVMDNEDDYFISLREEDEK 220
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 323 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 502
F P + L FS + DA + + M++N +I E++ E + +NLV E +
Sbjct: 242 FRKKPLQNVDDLNIMFSDIINDAS-DHWNPMSENPIIPEHMTEEVQEDNLVVDDEEVQET 300
Query: 503 RMEEDKDNSTD 535
MEE D + +
Sbjct: 301 PMEEMNDEAQE 311
>05_07_0352 -
29475855-29476330,29476421-29477165,29477689-29478081,
29478167-29478473,29478694-29479019
Length = 748
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 323 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 502
F P + L FS + DA + + M++N +I E++ E + +NLV E +
Sbjct: 219 FRKKPLQNVDDLNIMFSDIINDAS-DHWNPMSENPIIPEHMTEEVQEDNLVVDDEEVQET 277
Query: 503 RMEEDKDNSTD 535
MEE D + +
Sbjct: 278 PMEEMNDEAQE 288
>05_07_0357 -
29533496-29533556,29533638-29533770,29533857-29533953,
29534073-29534141,29534221-29534378,29534483-29534527,
29534598-29534625
Length = 196
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 509 EEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPP 628
+ D+D+S D D S D D ++ D+SE + ED P
Sbjct: 59 DSDEDDSEDEDLSPEDDDDDSSEDDSSEDDEDESDEEDTP 98
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 296 NWNHECVLKASEVY*THFRVQVCEFPSKIDYC*TGHEFSSKQFYESDY 153
NWN V KAS++ + + +V P KI++ HE + + Y +DY
Sbjct: 58 NWN---VQKASKMMKSAVKWRVSYMPQKINWDDVAHEAETGKIYRADY 102
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/101 (24%), Positives = 43/101 (42%)
Frame = +2
Query: 338 EDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEED 517
E E+E TK+ S + Q E L + + E L E + E V+ +E +K E+
Sbjct: 2515 EKEQEETTKDGSCLIASQQEENLVAFPIEKSVDEKLTFEQEKEK-VEGSEETKEPVKEQS 2573
Query: 518 KDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEI 640
D D S+ + + + E V A+D S+++
Sbjct: 2574 YDVEMDVQKSLETDEELKRNTCDLEAPVYQDNAQDEISSKL 2614
>12_02_1283 - 27532143-27532517,27532602-27532906,27533053-27533311,
27534412-27534618,27534726-27535181,27535866-27535963,
27536657-27536785,27537371-27537605,27538932-27539039,
27539110-27539160,27539261-27539445,27540207-27540274,
27541535-27541600,27541678-27541730,27542536-27542653,
27542743-27542844,27543525-27543682,27543763-27543840,
27543978-27544069,27544308-27544458
Length = 1097
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 479 RTERSKMKRMEEDKDNSTDRDAS-----IADKDSMVTDRDTSETS 598
R R + K +EED+DNS+D A D SM+T R S +
Sbjct: 1051 RRRRRQRKAIEEDEDNSSDESAGEEVIVRVDSPSMLTFRQPSSAA 1095
>07_03_1500 +
27001842-27002058,27002144-27002283,27002458-27002549,
27002680-27002776,27002871-27002951,27003031-27003263,
27003876-27004070,27004149-27004239,27004324-27004446,
27004542-27004692,27005060-27005262
Length = 540
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 452 EAKFENLVKRTERSKMKRMEEDKDNSTD--RDASIADKDSMVTDRDTSETSVETFTAEDP 625
E K + K + KR E D+++D S+ + D D SE VET +ED
Sbjct: 46 EKKRKRQSKAKAKKSKKRRAEGADSASDAVEGFSVFKGLAAKKDEDDSEKKVETGKSED- 104
Query: 626 PSNEIWQRLKDQEDQI 673
+E+ +R K+ E +I
Sbjct: 105 --SEVVRRRKEVEREI 118
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 524 NSTDRDASIADKDSMVTDRDTSETSVE---TFTAEDPPSNEIWQRLKDQEDQIR 676
++ + +A I+ DS + D D+SET+ F +E+ PS+ L ED+++
Sbjct: 134 SNAEVNADISLGDSQINDGDSSETAENKPGNFASENAPSSPCDASLHQTEDELQ 187
>04_01_0127 +
1368763-1369276,1385539-1385742,1386221-1386444,
1386520-1386707,1394955-1394970
Length = 381
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +2
Query: 362 KEFSSVYEDAQCERLSNMT---KNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNST 532
KEF ++ + A+ + L++ K L+Q+Y K + + + T+ S K EE+K +
Sbjct: 48 KEFEAMMQQARDQFLNSFMQTRKGTLVQKY-----KIKVVAEDTKTSSSK--EEEKKQAL 100
Query: 533 DRDASIADKDSMVTDRDTSE 592
D A +DKD+ TD E
Sbjct: 101 DDSAQPSDKDA--TDGSAQE 118
>03_01_0458 -
3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 521 DNSTDRDASIADKDSMVTDRDTSE 592
D +TD+D +ADKDS +R E
Sbjct: 593 DRNTDKDEEVADKDSFPKNRSNLE 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,828
Number of Sequences: 37544
Number of extensions: 259187
Number of successful extensions: 891
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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