Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0120
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37323| Best HMM Match : RTBV_P12 (HMM E-Value=2.3) 48 9e-06
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 38 0.006
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 37 0.013
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 37 0.013
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056) 33 0.28
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05) 32 0.37
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 32 0.37
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 32 0.37
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_25279| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09) 31 1.1
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15) 30 1.5
SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0) 30 1.5
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 30 1.5
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 30 1.5
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 30 2.0
SB_29507| Best HMM Match : E-MAP-115 (HMM E-Value=5.1) 30 2.0
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 29 2.6
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 29 2.6
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19) 29 2.6
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 29 3.5
SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4) 29 3.5
SB_56887| Best HMM Match : TolA (HMM E-Value=0.66) 29 3.5
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16) 29 3.5
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 3.5
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23) 29 4.6
SB_27099| Best HMM Match : DUF1103 (HMM E-Value=5.7) 29 4.6
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_51819| Best HMM Match : TGF_beta (HMM E-Value=1.9) 28 6.1
SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 28 6.1
SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3) 28 8.0
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 28 8.0
SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 28 8.0
>SB_37323| Best HMM Match : RTBV_P12 (HMM E-Value=2.3)
Length = 225
Score = 47.6 bits (108), Expect = 9e-06
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Frame = +2
Query: 182 KTHAPFNNNQFLMEIH-KPEPENAFNILQTP-SARTRDSSFSVDSD---DNYFYALPE-- 340
+T AP N QFLM+ H K EP + +P S+ SS SV + ++ E
Sbjct: 44 RTAAPENTTQFLMDDHEKFEPFVLSSPSLSPNSSGCEFSSSSVRGSPVCERDLQSVTELV 103
Query: 341 --DEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKR 481
+E Y K+F+ VY+ E L ++K ELI +Y+ LE K ENL+++
Sbjct: 104 GNFDELYFEKDFNDVYDSIHAETLLGLSKQELIYKYMELEKKEENLLRQ 152
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 38.3 bits (85), Expect = 0.006
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Frame = +2
Query: 206 NQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYE 385
+ +L+E KP+P +A + + +A T S VDS+ P D+ + + ++ E
Sbjct: 502 SSWLVESLKPQPSSAPGSVVS-TAPTSPISSKVDSEFE-----PSDQGSDVEE---TIEE 552
Query: 386 DAQCERLSNMTKNELIQE--YLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADK 559
Q E+L + EL+Q+ + +E ENL + + D+D+ D A A
Sbjct: 553 QEQVEKLDREKEIELLQQDSEMTIEEILENLPPQMLEERSDESSMDEDSDADSSADDASD 612
Query: 560 DSMVTDRDTSETSVET 607
+S +D + + S ET
Sbjct: 613 ESNESDIEVDDKSKET 628
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 37.1 bits (82), Expect = 0.013
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Frame = +2
Query: 200 NNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYF---YALPEDEEEYLTKEF 370
N+ L E+H EN F L+ ++R D +++ + A D++E +K+F
Sbjct: 156 NSEDGLEELHN---ENEF--LKIQASRLEDQKKALEQEVQTLKKIIANDRDKKEEESKDF 210
Query: 371 SSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASI 550
S + + Q R + + ++ + + + +N + TE + +K+ EDKD +
Sbjct: 211 SRHFREMQ-NRSEGYRRENIEKQAQIDQMRSKNNMLETENANLKKRLEDKDQDLRNITAE 269
Query: 551 ADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
DK+ + + + F+AED E+ LK + D + +
Sbjct: 270 NDKNKV----ENYKLKTAKFSAEDSLREEVGS-LKSKSDDLEK 307
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 37.1 bits (82), Expect = 0.013
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Frame = +2
Query: 200 NNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYF---YALPEDEEEYLTKEF 370
N+ L E+H EN F L+ ++R D +++ + A D++E +K+F
Sbjct: 2684 NSEDGLEELHN---ENEF--LKIQASRLEDQKKALEQEVQTLKKIIANDRDKKEEESKDF 2738
Query: 371 SSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASI 550
S + + Q R + + ++ + + + +N + TE + +K+ EDKD +
Sbjct: 2739 SRHFREMQ-NRSEGYRRENIEKQAQIDQMRSKNNMLETENANLKKRLEDKDQDLRNITAE 2797
Query: 551 ADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
DK+ + + + F+AED E+ LK + D + +
Sbjct: 2798 NDKNKV----ENYKLKTAKFSAEDSLREEVGS-LKSKSDDLEK 2835
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 419 KNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKD 523
+ EL+QE L++ K E L+ + SK + M+EDKD
Sbjct: 507 EKELLQEMLVVVEKREQLIAEMDESKHRYMDEDKD 541
>SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056)
Length = 416
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 398 ERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTD 577
E + + ++EL + E + E + +R ++K + D+D + DRD DK D
Sbjct: 288 ENDNKLKEDELQRSKREREREKERDRNKEDRDRVKDRDRDRDKARDRDRERRDKHKSSRD 347
Query: 578 RDTSETS 598
RD +S
Sbjct: 348 RDKDRSS 354
>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
Length = 359
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 440 YLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSE 592
YLLL +KF+ + ++ + + K+NS+ A I++ DS V +D E
Sbjct: 239 YLLLASKFKQVTVHIKKRTEPQESDQKNNSSFESAKISEGDSGVPSQDMLE 289
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +2
Query: 338 EDEEEYLTKEFSSVYEDAQCERLSN-MTKNELIQEYLLLEAKFENLVKRTERSKMKRMEE 514
++E EYL +E ++ YE +L N + + ++E++ +E K + R+K+K+
Sbjct: 1662 KNEVEYLREEKNNSYEQKLINQLKNEVLELSAVKEFIEIELKTAAKDRDMLRAKLKKDYN 1721
Query: 515 DKDNSTDRDASIADKDSMVTDRDTSETSVE 604
+NS D A + + ++ E VE
Sbjct: 1722 KINNSLKFDLEQAREQLLDREKSVQELRVE 1751
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 449 LEAKFENLVKRTERSKMK-RMEEDKDNSTDRDASIADKDSMVTDRDTSETSV-ETFTAED 622
+ KFE+ + + M ++ ED + +TD +++ KDS ++D D T V + T D
Sbjct: 62 MAVKFEDSDESDDDVPMADKLTEDMEQNTDDNSNTVAKDSSISDMDYLRTKVTSSKTESD 121
Query: 623 PPSNEIWQRLKDQEDQI 673
N+ + D+E+ I
Sbjct: 122 TDVNKEFDSDDDREETI 138
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/90 (21%), Positives = 41/90 (45%)
Frame = +2
Query: 311 DDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 490
DD+ F + +D E+ TK S + ++ ELIQ ++ + ++
Sbjct: 577 DDSMFDDMEDDAEKSGTKRLSGRHSTSKRHSREPSDARELIQARQSKPSEPLKIKSEVDK 636
Query: 491 SKMKRMEEDKDNSTDRDASIADKDSMVTDR 580
SK + ++E+ N T+R + + + + D+
Sbjct: 637 SKEEEVKEESRNRTERGSKVKREPEWLRDQ 666
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 296 FSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLV 475
F++D ++ F +PED E+ SS+Y + N ++ E + + +E+ EN+
Sbjct: 500 FNIDKVESVFEKMPEDIEDENESTLSSMYGQIRVSLKINNSQVESDRVNVFIESVLENIF 559
Query: 476 KR-TERSKMKRMEEDKDNSTDRD 541
+ T ++ M+ DK+ + R+
Sbjct: 560 RMFTIQNLYNSMKIDKNKTYRRN 582
>SB_25279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 31.1 bits (67), Expect = 0.86
Identities = 28/118 (23%), Positives = 45/118 (38%)
Frame = +2
Query: 230 KPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLS 409
K +P++ P +R + S D + A P SS A+ + S
Sbjct: 34 KSKPQDQDKQAARPRQASRKTKTSKPQDQDKQAARPRQAARQARPRQSSRKSKARARQAS 93
Query: 410 NMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRD 583
+K Q+ A+ +T+ SK + E+DK + R AS K S D+D
Sbjct: 94 RKSKTSKPQDQDKQAARLRQASLKTKTSKQQ--EQDKQAARPRQASRKTKTSKPQDQD 149
>SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)
Length = 337
Score = 30.7 bits (66), Expect = 1.1
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Frame = +2
Query: 278 RTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQ---CERLSNMTK---NELIQE 439
+ + F+ +N ++L E EE KE+ S ++D + +R K NEL +
Sbjct: 213 KLEEMGFNDGDANNKSHSLQETYEER-RKEYMSQFQDKEEKMRQRFVQKVKDKENELKKA 271
Query: 440 YLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTA 616
L AKF++L K+ + + K++EE K + + S+ +K +T++ + TA
Sbjct: 272 EQELHAKFDHL-KKVQAEEKKKLEE-KRKMLEEEMSLFEKQKAAA--NTAQAQAQQATA 326
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +2
Query: 278 RTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQ---CERLSNMTK---NELIQE 439
+ + F+ +N ++L E EE KE+ S ++D + +R K NEL +
Sbjct: 108 KLEEMGFNDGDANNKSHSLQETYEER-RKEYMSQFQDKEEKMRQRFVQKVKDKENELKKA 166
Query: 440 YLLLEAKFENLVKRTERSKMKRMEEDK 520
L AKF++L K+ + + K++EE +
Sbjct: 167 EQELHAKFDHL-KKVQAEEKKKLEEKR 192
>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
Length = 458
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Frame = +2
Query: 242 ENAFNILQTPSARTR--DSSFSVDSDDNYFYA----LPEDEEEYLTKEFSSVYEDAQCER 403
+ A+ IL+ P A + +SDD+ +Y+ +DE++ L S +
Sbjct: 6 DEAYRILELPRAMYGFCNGRHHYESDDDSYYSDDNYEDDDEDDLLHTMASKLTSKHDRSS 65
Query: 404 LSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRD 583
N T + L EA+ N K+ ++ K+K +K+N D + S +D
Sbjct: 66 KPNTTHIYGKPAHNLTEAR--NKEKKKQKDKVKPDNSEKENKQDNIIDSSGSTSKTHLKD 123
Query: 584 TSETS 598
T TS
Sbjct: 124 TENTS 128
>SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)
Length = 727
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 449 LEAKFENLVKRTERSKMKRMEEDKDN---STDRDASIADKDSMVTDRDTSETSVETFTAE 619
L+A+FEN+ K+ E K+ EE+K R+ A + + +E S AE
Sbjct: 371 LKARFENMAKQEEEDARKKAEEEKQRRQAKEQREREAAQRRQEMEAAKDAEASEREAEAE 430
Query: 620 DPPSNEIWQRLKDQEDQIRE 679
+ + + + QE+ RE
Sbjct: 431 RAAAED--EARRQQEEAERE 448
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/124 (21%), Positives = 51/124 (41%)
Frame = +2
Query: 308 SDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTE 487
S++N E+E+ +F S E+ Q + KNE + L EA N + E
Sbjct: 1856 SEENRLLKRKENEQSENVDDFESG-EELQLKIKELNEKNESLSSQLR-EAISANSQLKEE 1913
Query: 488 RSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQED 667
+++ + R + ++T+ D + +T E E ++LKD +
Sbjct: 1914 NGILEQRIASLEKEASRSQMTGSEGEVLTENDRLKEENKTLKEEHTELAEQNEKLKDALE 1973
Query: 668 QIRE 679
++RE
Sbjct: 1974 ELRE 1977
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 30.3 bits (65), Expect = 1.5
Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 29/193 (15%)
Frame = +2
Query: 179 TKTHAPFNNNQFLMEIHKPEPENAF-NILQTPSARTRDSSFSVDSD---DNYFYALPEDE 346
T+ + + +++E K E E +Q S V++D D Y + E
Sbjct: 2906 TQLETSYKESTYILETFKSEKETVILESVQDASEMIEMDEIQVENDKLKDELVYV--KQE 2963
Query: 347 EEYLTKEFSSVYEDAQC--ERLSNMT--------KNELIQ-EYLLLEAKFENLVKRTE-- 487
E++T++ S + + E++ ++T KN+ Q E + L A+ EN ++ +
Sbjct: 2964 MEFITRKMSGFSNERKSYEEKIESLTGEMSGLKGKNDWFQSESIKLNAELENTKEKLDIA 3023
Query: 488 RSKMKRMEEDK----DNSTDRDASIADKDS-------MVTDRDTSETSVE-TFTAEDPPS 631
S +K ++++K D D ++ K+S + D T + + + S
Sbjct: 3024 ESTIKNIKQEKNRFQDEVNDLHGKVSQKNSENELLHAQLDDLRKQITGYQGNIKSLEENS 3083
Query: 632 NEIWQRLKDQEDQ 670
N + +R+KD ED+
Sbjct: 3084 NRLQERIKDLEDE 3096
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 29.9 bits (64), Expect = 2.0
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Frame = +2
Query: 182 KTHAPFNNNQFLMEIHKPEPENAFNILQTPSARTRD----SSFSVDSDDNYFYALPEDEE 349
++H N L EIH P P R R S+ S+ S N AL + +
Sbjct: 137 RSHIFPNQYPILGEIHLRTPTGTSYNYCGPGTRLRQRLNSSNPSISSPINILDALCQKHD 196
Query: 350 EYLTK----EFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEED 517
+K + V +D E +SN+ KN + L+ + +K+T R+ K+ ++D
Sbjct: 197 IAYSKSKDLDDKHVADDNLLEAISNIPKNMQPPKTPLVRSLI--FIKKTTRNGKKKEDKD 254
Query: 518 KDNSTDR 538
K+ ++ R
Sbjct: 255 KEENSPR 261
>SB_29507| Best HMM Match : E-MAP-115 (HMM E-Value=5.1)
Length = 198
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 476 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSE 592
+R SK R D+D++ DRD D+D+ DR T +
Sbjct: 7 RRGRNSKHDRDRRDRDSTHDRDTRDRDEDARDCDRGTPD 45
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +2
Query: 338 EDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEED 517
+D E K V+E E + ++L E + + K + V S+++ +E
Sbjct: 394 KDNESDQLKWKDRVHEWESVEVMLKKQVDDLTNELEVTKTKVSDRVDGAMVSRVQELESQ 453
Query: 518 KDNSTDRDASI-ADKDSMVTDRDTSETSVETFTAEDPPSNE 637
D++++ ++ +D D ++ DRD +E + + +NE
Sbjct: 454 LDDTSNSVNNLKSDYDMVLRDRDDLRKEIEVISTKLTTTNE 494
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Frame = +2
Query: 344 EEEYLTKEFSSVYEDAQCERLSNM-TKNE-LIQEYLLLEAKFENLVKRTERSKMKRMEED 517
EEE KE V E+ + R S TK E +++E E E ++ E + +R +E+
Sbjct: 196 EEEPKQKEL--VGEEPKTRRTSRRRTKQEEIVEEEPKQEGPVEEETRQEEPDEKEREQEE 253
Query: 518 KDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQIREL 682
+ ++++ + E E E+P E QE+Q+ EL
Sbjct: 254 LVEEEPKKEEPVEEETKQEEPVEEEPKQEEAVDEEPKKEEQVDGEPKQEEQVEEL 308
>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
Length = 1341
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Frame = +2
Query: 428 LIQEYLLL--EAKFENLVKRTERSKMKR---MEE--DKDNSTDRDASIADKDSMVTDRDT 586
L+ EY+LL E +F N ++ + + R M E DKDNS R ++ K +
Sbjct: 288 LLDEYILLVIETRFYNEMEEKLQELLDRHLRMGEGIDKDNSPLRVQTVVTKTKFTVPDEE 347
Query: 587 SETSVETFTAEDPPSNEI--WQRLKDQED 667
+ S + + ++PPS +RLK ++D
Sbjct: 348 TLVSRKRDSMDEPPSRTTNRNKRLKSRDD 376
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Frame = +2
Query: 266 TPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYL 445
+PS S +DN + E++ T+ ++ E + E ++ + E+ +E L
Sbjct: 128 SPSLSASPSEDESIVNDNKDKSSTVKEDKITTENNDNLLERIEQELITIKQEKEMFEEML 187
Query: 446 LLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDT--SETSVETFTAE 619
L E + + +E + + +D ++ I M+T+RD+ +E E T +
Sbjct: 188 LQEKQKSKDLASSEENLQNLNKTLQDELNSKNEEIGKLRPMLTERDSMIAELRSELATFQ 247
Query: 620 DPPSNEIWQRLKDQEDQI 673
+ N + L+D +++
Sbjct: 248 E-NKNMLLSTLEDTRNEL 264
>SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4)
Length = 497
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 130 PPITPRSFYKRRHNFTFGIRASP-FLFDVSVNASRFLFFND 11
PPITP +F++ + GI S F F + ASR L +D
Sbjct: 48 PPITPNAFWEWSVSLLTGILVSSLFYFTLETRASRLLASSD 88
>SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)
Length = 404
Score = 29.1 bits (62), Expect = 3.5
Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Frame = +2
Query: 221 EIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYAL--PEDEEEYLTKEFSSVYEDAQ 394
E PE + FN++ T T D + + P +EE +E ED
Sbjct: 111 EEENPENQETFNVIIT-KINTEDDEKDESRGEKVDSSTQTPRGDEESKNQETDG--EDK- 166
Query: 395 CERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTD--RDASIADKDSM 568
+ S K+E +E + + ++ + K ++DK + D +DA DKD
Sbjct: 167 -DEASKDEKDEDPKEDVAAKKYEDDQFDEDDDDDKKDDDDDKTDDDDDKKDAEKEDKDES 225
Query: 569 VTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
+ D+S +S + ++ + ++ D +D+ ++
Sbjct: 226 GNESDSSSSSSSSSSSSSDDDDSDHEKDADDDDEKKD 262
>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
Length = 417
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +2
Query: 446 LLEAKFENLVKRTER-----SKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSE-TSVET 607
LL FE L ++ E +KR+E+DK+N + + D+ S + DR + +ET
Sbjct: 127 LLNVLFERLEQQAEALDSLSGTVKRLEKDKNNQAGTISKLQDEVSRLNDRLREQGVDMET 186
Query: 608 FTAEDPPSNEIWQR 649
+ +N ++ R
Sbjct: 187 ERKLEQVNNSLYSR 200
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +2
Query: 383 EDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKD 562
E+ + +R N L QEY EA + + K KR +ED+ +D +D
Sbjct: 1501 EETKRQRQKEAAANAL-QEY---EAMMKAAADEKSKEKKKRKKEDEATRSDDGTDEKTED 1556
Query: 563 SM---VTDRDTSETSVET 607
SM D D+S T+ +T
Sbjct: 1557 SMQEDAKDLDSSNTASDT 1574
>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.1 bits (62), Expect = 3.5
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Frame = +2
Query: 224 IHKPEPENAF-NILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCE 400
+ + EPE+ N + A+ + +D DD ++LP+DE++ + A+ +
Sbjct: 567 VFRAEPESLLKNAVTEYMAKKKGHQQVIDQDDEIVFSLPDDEKDAPPPNVQTPDPAARPK 626
Query: 401 RLSNMTKNELIQEYLLLEA-KFENLVKRTERS---KMKRMEEDKDNSTDRDASIADKDSM 568
+ + +Y + +A F++ ++ ERS ++R + S A + D D +
Sbjct: 627 APTVDDVPSSVVKYSVTKATPFKSRLQACERSVITPVRRSARLERRSISYPAMLQDHDLV 686
Query: 569 VTD-----RDTSETSV-ETFTAEDPPSNEIWQRLKDQE 664
V + DT + +V + A + NE W+ + + E
Sbjct: 687 VANLGDLSEDTRKEAVYKPNFAVEAELNEAWKEMWEAE 724
>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
Length = 553
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 515 DKDNS-TDRDASIADKDSMVTDRDTS-ETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
D DNS D D SI D D+ + D D S + + D N+ + D ++ I +
Sbjct: 350 DNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSIND 406
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 515 DKDNS-TDRDASIADKDSMVTDRDTS-ETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
D DNS D D SI D D+ + D D S + + D N+ + D ++ I +
Sbjct: 357 DNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSIND 413
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 515 DKDNS-TDRDASIADKDSMVTDRDTS-ETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
D DNS D D SI D D+ + D D S + + D N+ + D ++ I +
Sbjct: 364 DNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSIND 420
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 515 DKDNS-TDRDASIADKDSMVTDRDTS-ETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
D DNS D D SI D D+ + D D S + + D N+ + D ++ I +
Sbjct: 371 DNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSIND 427
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 515 DKDNS-TDRDASIADKDSMVTDRDTS-ETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
D DNS D D SI D D+ + D D S + + D N+ + D ++ I +
Sbjct: 451 DNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSIND 507
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 515 DKDNS-TDRDASIADKDSMVTDRDTS-ETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
D DNS D D SI D D+ + D D S + + D N+ + D ++ I +
Sbjct: 458 DNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSIND 514
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 515 DKDNST--DRDASIADKDSMVTDRDTS-ETSVETFTAEDPPSNEIWQRLKDQEDQIRE 679
D DNS+ D D SI D D+ + D D S + + D N+ + D ++ I +
Sbjct: 335 DNDNSSIYDNDNSIYDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSIND 392
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 515 DKDNS-TDRDASIADKDSMVTDRDTS-ETSVETFTAEDPPSNEIWQRLKDQEDQI 673
D DNS D D SI D D+ + D D S + + D N+ + D ++ I
Sbjct: 378 DNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSI 432
>SB_27099| Best HMM Match : DUF1103 (HMM E-Value=5.7)
Length = 205
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 509 EEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDP 625
E D S D D+ +D ++ D SE +E+ EDP
Sbjct: 41 EHDGYRSEDEDSESSDSTDSTSESDVSEMVMESTNEEDP 79
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -1
Query: 616 CGKCFNRSLRCISVSHHTIFICNRRISVSAIVFIFLHSFHLRALSPFYKVFKLC 455
C + SL + V+H F C+ SVS F+ HS H L LC
Sbjct: 277 CHTLVSVSLTLLGVTHS--FRCHSLFSVSHTRFVITHSSHCHTLVSVLHTLPLC 328
>SB_51819| Best HMM Match : TGF_beta (HMM E-Value=1.9)
Length = 696
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 554 LQSTHLCQCYCLYLPPFVSSSSAQSFLQGFQTL 456
L S + +C+C Y PP SS S+ G L
Sbjct: 330 LASADVRRCFCRYAPPLNFSSPLPSYASGISAL 362
>SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +2
Query: 344 EEEYLTKEFSSVYEDAQCERLSN-MTKNELIQEYL--LLEAKFENLVKRTERSKMKRMEE 514
+ + TKE + Q ++ + +++L E+L LL A E + E K K
Sbjct: 270 QNQLRTKEMDINRQQVQIRSMNEQLEQSQLEVEHLQGLLAASREKSAREKEALK-KAARV 328
Query: 515 DKDNSTDRDASIADKDSMVTDRDTSETSV 601
KD +RD I + +TDR+ + + V
Sbjct: 329 QKDRVLERDKDIENLQQKLTDREVALSEV 357
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 254 NILQTPSARTRDSSFSVDSDDNYFYAL 334
++ QTP AR+ +S SV + +YFY L
Sbjct: 785 SLRQTPIARSTHASLSVSVEPDYFYIL 811
>SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)
Length = 215
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Frame = +2
Query: 446 LLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAED- 622
L E + +N+ KR + KR EE R S + + D+ +++ ET +
Sbjct: 91 LNEKEEDNMRKRLQELAAKRAEEQAREGQLRKKSGKTYEEWLQDKSKTDSLKETTEVRND 150
Query: 623 -------PPSNEIWQRLKDQEDQIRE 679
P E W R KDQE RE
Sbjct: 151 RGSLKTSPLKFEEWMRRKDQEALERE 176
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/67 (19%), Positives = 32/67 (47%)
Frame = +2
Query: 479 RTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKD 658
+T+ +K K E ++D + +KD ++D ++ + + +NE + K+
Sbjct: 463 KTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKNNKDKTKENKDKTNENKDKTKE 522
Query: 659 QEDQIRE 679
+D+ +E
Sbjct: 523 NKDKTKE 529
>SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +2
Query: 458 KFENLVKRTERSKMKRMEEDKDNSTDRDASIADK--DSMVTDRDTSETSVETFTAEDPPS 631
KF+N + + + K+KR ++ +D D ++ D TD++ S+ E + PP
Sbjct: 121 KFDNFLTKVFKKKIKRAKKKTQEGSDEDNEDENREYDFSSTDQEDSDAE-ELDDSVCPPG 179
Query: 632 NEIWQRLKDQEDQIRE 679
+ Q L D Q+RE
Sbjct: 180 CD--QGLFDHVCQLRE 193
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/110 (20%), Positives = 48/110 (43%)
Frame = +2
Query: 338 EDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEED 517
+D++E K+ + + Q ++ S+ + +E + K +N K+T+ + EED
Sbjct: 156 DDKDEKPKKKADNKGKKTQAKQESSSEDDSSDEEDEKPKKKADNKGKKTQAKQESSSEED 215
Query: 518 KDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQED 667
+ + + D V + S ++ED SNE ++ K + D
Sbjct: 216 DSSDEEEEKPKKKADDKVKKTPAKQES----SSEDDSSNEEEEKPKKKAD 261
>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 371 SSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDAS 547
+S+ E + + E +E +L K E L R E SKM +++++++NS + + S
Sbjct: 106 NSIEEPKKVKEQGGNVALESEEEKILAAQKLEAL--RAELSKMSKLDDEEENSDEENES 162
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/95 (27%), Positives = 46/95 (48%)
Frame = +2
Query: 338 EDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEED 517
+DEE +L +E E+ Q + + K E +E EA+ + ER K K+ E+D
Sbjct: 909 KDEERHLREE----EEERQRKEAAKGKKEE--EEKKEKEAEERRRAEDEERIK-KQAEKD 961
Query: 518 KDNSTDRDASIADKDSMVTDRDTSETSVETFTAED 622
+ + + + KDSM + S T+ + ++ED
Sbjct: 962 RKKAIKKRKRRSWKDSMASLESESSTTSSSSSSED 996
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,247,224
Number of Sequences: 59808
Number of extensions: 318931
Number of successful extensions: 4611
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 4318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4556
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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