Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0120
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.67 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.67 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.67 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.67 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.7  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 281 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEA 457
           +RD +      D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E 
Sbjct: 5   SRDRNREYRKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRET 62

Query: 458 KFENLVKRTERSKMK 502
             E    RTER + +
Sbjct: 63  SKERSRDRTERERSR 77


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 281 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEA 457
           +RD +      D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E 
Sbjct: 5   SRDRNREYRKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRET 62

Query: 458 KFENLVKRTERSKMK 502
             E    RTER + +
Sbjct: 63  SKERSRDRTERERSR 77


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 281 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEA 457
           +RD +      D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E 
Sbjct: 5   SRDRNREYRKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRET 62

Query: 458 KFENLVKRTERSKMK 502
             E    RTER + +
Sbjct: 63  SKERSRDRTERERSR 77


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 281 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEA 457
           +RD +      D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E 
Sbjct: 5   SRDRNREYRKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRET 62

Query: 458 KFENLVKRTERSKMK 502
             E    RTER + +
Sbjct: 63  SKERSRDRTERERSR 77


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 459 FASNRRYSCISSFFVIFDRRSHCASSY 379
           FAS R YS  S   V   R S C  +Y
Sbjct: 429 FASGRYYSAYSLHHVRSSRESSCEQTY 455


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 422 NELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTD 535
           NE++    L + K  +++  T+  ++K    D D ST+
Sbjct: 418 NEIVTAQFLNQLKKSSVLVHTKNGRLKYQISDNDISTN 455


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 236 EPENAFNILQTPSARTRDSSFSVD 307
           EP+N+ N    P  R  + + SVD
Sbjct: 361 EPDNSSNFAMKPLVRQPEDTMSVD 384


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 236 EPENAFNILQTPSARTRDSSFSVD 307
           EP+N+ N    P  R  + + SVD
Sbjct: 361 EPDNSSNFAMKPLVRQPEDTMSVD 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,152
Number of Sequences: 438
Number of extensions: 3032
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)