Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0120
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 35 0.057
At1g63240.1 68414.m07148 expressed protein 35 0.057
At2g22795.1 68415.m02704 expressed protein 34 0.076
At1g05420.1 68414.m00550 ovate protein-related contains TIGRFAM ... 33 0.13
At4g27595.1 68417.m03964 protein transport protein-related low s... 33 0.17
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 32 0.31
At5g52710.1 68418.m06543 heavy-metal-associated domain-containin... 32 0.40
At3g50550.1 68416.m05528 expressed protein isoform contains a n... 31 0.53
At1g12980.1 68414.m01507 AP2 domain-containing transcription fac... 31 0.53
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 31 0.71
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 31 0.71
At2g30690.1 68415.m03742 expressed protein contains Pfam profile... 31 0.93
At1g60640.1 68414.m06826 expressed protein 31 0.93
At4g11200.1 68417.m01813 hypothetical protein contains weak hit ... 30 1.2
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 30 1.2
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 30 1.2
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 29 2.2
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 2.8
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 2.8
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 2.8
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 2.8
At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 famil... 29 3.8
At5g54410.1 68418.m06777 hypothetical protein 28 5.0
At4g26290.1 68417.m03782 expressed protein 28 5.0
At3g28770.1 68416.m03591 expressed protein 28 5.0
At1g55600.1 68414.m06364 WRKY family transcription factor simila... 28 5.0
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 28 5.0
At4g00231.1 68417.m00026 ataxin-related contains weak similarity... 28 6.6
At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1) domain... 28 6.6
At1g23950.3 68414.m03023 expressed protein 28 6.6
At1g23950.2 68414.m03022 expressed protein 28 6.6
At5g61360.1 68418.m07699 expressed protein 27 8.7
At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 famil... 27 8.7
At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 famil... 27 8.7
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 27 8.7
At3g07530.1 68416.m00899 expressed protein ; expression supporte... 27 8.7
At1g48110.1 68414.m05369 expressed protein contains Pfam profile... 27 8.7
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 27 8.7
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 27 8.7
At1g25380.1 68414.m03150 mitochondrial substrate carrier family ... 27 8.7
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain... 27 8.7
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 34.7 bits (76), Expect = 0.057
Identities = 26/106 (24%), Positives = 45/106 (42%)
Frame = +2
Query: 221 EIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCE 400
++++ E F + P++RTRD S +N F + + +V D CE
Sbjct: 475 QVNEEMIETLFKV-NDPTSRTRDGVVQSVSQENRFLDPRKSHNIAILLRALNVTADEVCE 533
Query: 401 RLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDR 538
L + L E LLE + + E K+K +++D D S +
Sbjct: 534 ALIEGNSDTLGPE--LLECLLKMAPTKEEEDKLKELKDDDDGSPSK 577
>At1g63240.1 68414.m07148 expressed protein
Length = 548
Score = 34.7 bits (76), Expect = 0.057
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Frame = +2
Query: 257 ILQTPSARTRDSSFSVDSD--DNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNEL 430
+L S + DSS V + YA+ EDEE++ +E+ E SN+T
Sbjct: 130 VLDENSMESEDSSGEVYETGCNEITYAIEEDEEDFSEREYVE-----NVENFSNITSTP- 183
Query: 431 IQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETF 610
L ++ E + K R+K + + ED+D S+D D + + ++ E V +
Sbjct: 184 ------LRSQPERMQKLESRAKTQCVFEDEDLSSDSDNKLPEAETSKEGNGLGEGHVVSN 237
Query: 611 TAEDPPSNEIWQRLKDQEDQIREL 682
E + + +D+ RE+
Sbjct: 238 LVESFEKKTSHGVMVECDDKAREI 261
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 34.3 bits (75), Expect = 0.076
Identities = 23/94 (24%), Positives = 43/94 (45%)
Frame = +2
Query: 338 EDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEED 517
E E E + KE S+ E+ + + + K E + E + E K E S +E+
Sbjct: 579 EKENEKIEKEESAPQEETKEKENEKIEKEESASQEETKEKETET--KEKEESSSNESQEN 636
Query: 518 KDNSTDRDASIADKDSMVTDRDTSETSVETFTAE 619
+ +++ + + + TD DTSE+S E ++
Sbjct: 637 VNTESEKKEQVEENEKK-TDEDTSESSKENSVSD 669
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/109 (22%), Positives = 48/109 (44%)
Frame = +2
Query: 344 EEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKD 523
+EE +E + ++ + M K +E + ++ +N K TE+ + +EE K
Sbjct: 444 QEESKDRETETKEKEESSSQEETMDKETEAKEKVESSSQEKNEDKETEKIESSFLEETK- 502
Query: 524 NSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQ 670
+++ +K+ + T E ET E+ S E KD+E++
Sbjct: 503 ---EKEDETKEKEESSSQEKTEEKETETKDNEESSSQE---ETKDKENE 545
>At1g05420.1 68414.m00550 ovate protein-related contains TIGRFAM
TIGR01568 : uncharacterized plant-specific domain
TIGR01568
Length = 226
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 224 IHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDE 346
IH EP + F + +A + SS S D DNY +A P+D+
Sbjct: 62 IHDVEPSSTFTASTSTAANSSSSSASYDDSDNYGFA-PDDD 101
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +2
Query: 386 DAQCERLSNMTKNELIQEYLLLEAKFEN-LVKRTERSKMKRMEEDKD-NSTDRDASIADK 559
+ + E LSN+ K+ L++E L + FEN +K E +K EE D T D K
Sbjct: 871 EKKIEELSNLNKSLLVKESELQDVVFENEKLKSKEALSLKTTEELSDVKQTLADKEKELK 930
Query: 560 DSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQI 673
++V + + +F + N + Q L D+E+++
Sbjct: 931 TAVVENEKLKAQAASSFQKIEELKN-LKQSLLDKENEL 967
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 32.3 bits (70), Expect = 0.31
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +2
Query: 341 DEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVK-RTE--RSKMKRME 511
DEE T+ ++ E + ++ +E QE L + + + LV+ RT R K R
Sbjct: 1711 DEEPTKTETKATDNESRKIHQIKEQGTSE--QERLKEQGRIKELVEDRTHFCREKENRET 1768
Query: 512 EDKDNSTDRDASIADKDSMV-TDRDTSETSVETFTAEDPPSNEIWQRLKDQE 664
E +D S+ I ++S+ DR+TSE E E E W+ QE
Sbjct: 1769 EYEDGSSKMIQEIDKEESIEPVDRETSEDDEEELEIEFEDEEEDWEAEVIQE 1820
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/98 (19%), Positives = 37/98 (37%)
Frame = +2
Query: 344 EEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKD 523
E+EY + +E+ ++L + E+ ++ E K R+ K ++
Sbjct: 1621 EDEYDSSRKIHEHEERMSDKLEMHGEEEMSEKLAEEETSDGEEAKEGNRAGKKSRDDGFG 1680
Query: 524 NSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNE 637
+ D D ++DTS + E E+P E
Sbjct: 1681 KVRKIEVQRKDNDQSFVEKDTSGKAKENLNDEEPTKTE 1718
>At5g52710.1 68418.m06543 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 451
Score = 31.9 bits (69), Expect = 0.40
Identities = 25/149 (16%), Positives = 58/149 (38%)
Frame = +2
Query: 188 HAPFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKE 367
HA Q ++ +P+P+ F L + + + D +F + +++ + +E
Sbjct: 254 HAQGLYKQNANKVFQPQPKGGFAALNLGEKKKQAEVKKQNQDAGWFGNMFGNQQPQVKQE 313
Query: 368 FSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDAS 547
F E+ +R+ + L ++ + K N R+ E ++ +R +
Sbjct: 314 FRGKRENQHAQRIDPLIIQGLDGKFHAYKEKNNNPYARSSNGPTSNNEFGSSSTRNRSSF 373
Query: 548 IADKDSMVTDRDTSETSVETFTAEDPPSN 634
+M + TS +SV + P++
Sbjct: 374 SRSSSAMDLSQTTSSSSVAYSSYSTTPNS 402
>At3g50550.1 68416.m05528 expressed protein isoform contains a
non-consensus AT donor site at intron 1
Length = 95
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 491 SKMKRMEEDKDNSTDRDASIADKDSMVTDR----DTSETSVETFTAEDPPSNEIWQRLKD 658
S + +ED D+ D D +D+D DR D SE+S + +T + S++ + D
Sbjct: 12 SSDEEYDEDDDDDDDTDGESSDEDDEEEDRNLSGDDSESSEDDYTDSNSDSDDDDEEDDD 71
Query: 659 QEDQIRE 679
E++ E
Sbjct: 72 DEEEEEE 78
>At1g12980.1 68414.m01507 AP2 domain-containing transcription
factor, putative / enhancer of shoot regeneration (ESR1)
similar to gb|D38124 EREBP-3 from Nicotiana tabacum and
contains PF|00847 AP2 domain; identical to cDNA enhancer
of shoot regeneration ESR1 GI:18028939, enhancer of
shoot regeneration ESR1 [Arabidopsis thaliana]
GI:18028940
Length = 328
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 233 PEPENAF-NILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQC 397
PEP +F N +PSAR S +DS FY P + Y T+ S DA C
Sbjct: 121 PEPRFSFSNKKSSPSARCPLPSLPLDSSTQNFYGAPAAQRIYNTQ--SIFLRDASC 174
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 353 YLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNST 532
Y T + +YED CE L + LI L+ + K+ ++ +K+ E+ K NS
Sbjct: 66 YDTGLYRVIYEDGDCEELESGDLRRLIISDSYLDDELRVRRKKLDKLILKKEEKKKRNSP 125
Query: 533 DRDA 544
+ A
Sbjct: 126 ENKA 129
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 353 YLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNST 532
Y T + +YED CE L + LI L+ + K+ ++ +K+ E+ K NS
Sbjct: 66 YDTGLYRVIYEDGDCEELESGDLRRLIISDSYLDDELRVRRKKLDKLILKKEEKKKRNSP 125
Query: 533 DRDA 544
+ A
Sbjct: 126 ENKA 129
>At2g30690.1 68415.m03742 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593; expression
supported by MPSS
Length = 788
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 476 KRTERSKMKRMEEDKDNSTDRDASIAD---KDSMVTDRDTSETSVETFTAEDPPSNEIWQ 646
KRT +S+ ++ +DK S + + D K V D +T E+S+ + E+ +
Sbjct: 249 KRTHKSRRRKSFDDKKMSNHKQPVLQDNQYKKIHVEDNETVESSMLGYNLENRTRQKQPV 308
Query: 647 RLKDQEDQIREL 682
+ K+ +D + EL
Sbjct: 309 KAKEHDDVLSEL 320
>At1g60640.1 68414.m06826 expressed protein
Length = 340
Score = 30.7 bits (66), Expect = 0.93
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Frame = +2
Query: 335 PEDEEE-YLTK---EFSSVYEDAQCERLSNMTKNELIQEYLLLE--AKFENLVK----RT 484
PE+EEE Y+ + SVY+ C + + +N + Q ++ + A+ E LVK RT
Sbjct: 96 PEEEEENYILGCMIQSKSVYKCRYCPTVVCLNENTM-QAHVSSKKHARMEKLVKEGKIRT 154
Query: 485 ERSKMKRME---EDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLK 655
+ ++ +E ++K+ +R + K S ++D+ + E EDP + +++K
Sbjct: 155 DDEEVDDLETASQEKEKKGNRRSQRQGKRSQKQEKDSLTKNGENEEVEDPETPSQEKQIK 214
Query: 656 DQEDQIREL 682
REL
Sbjct: 215 GNRRARREL 223
>At4g11200.1 68417.m01813 hypothetical protein contains weak hit to
Pfam profile PF03108: MuDR family transposase
Length = 462
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 233 PEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERL 406
P+ E I+ + V NY +P ++EEY T + S E+ Q ERL
Sbjct: 277 PDSELEAEIVDEEDVNVKAEEIQVFDIRNYEEQIPYEDEEYPTTDDESGDEEVQAERL 334
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 386 DAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRME 511
D +C RL + + E+ QEYL + E K+ ++ ++K++E
Sbjct: 586 DERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVE 627
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 30.3 bits (65), Expect = 1.2
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Frame = +2
Query: 242 ENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTK 421
E A NI ++ +V S+ A DE E ++ E + E K
Sbjct: 131 EAALNIATENEKELTENLNAVTSEKKKLEATV-DEYSVKISESENLLESIRNELNVTQGK 189
Query: 422 NELIQEYL----LLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTS 589
E I+ L L E++ +K E S ++ E + +T R A S+ D +
Sbjct: 190 LESIENDLKAAGLQESEVMEKLKSAEESLEQKGREIDEATTKRMELEALHQSLSIDSEHR 249
Query: 590 -ETSVETFTAEDPPSNEIWQRLKDQEDQIR 676
+ ++E FT+ D ++ + ++L+D E +I+
Sbjct: 250 LQKAMEEFTSRDSEASSLTEKLRDLEGKIK 279
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +2
Query: 398 ERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTD 577
E L + EL+ E +AK KR +S KR + D+D A +DSM +
Sbjct: 681 EELEDAAPPELLSEKKQEKAKKSGSKKRNHKST-KRTSASMSSHLDQDVEQAKEDSMELE 739
Query: 578 RDT 586
DT
Sbjct: 740 DDT 742
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = +2
Query: 464 ENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTD--RDTSETSVETFT-----AED 622
ENL K+T+R ++ +D D D D+M D RD S+ +VE +T A+D
Sbjct: 371 ENLKKKTKRKRVTSTIMAEDLPVSDDIKRDDSDTMADDIERDDSD-AVEYYTACESMADD 429
Query: 623 PPSNEIWQRLKDQEDQIRE 679
S+ + +R D D + +
Sbjct: 430 TASDSVAER--DDSDAVED 446
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 476 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLK 655
+ T RSK + E+ +D +RD+ ++ + DRD E S E +D E R
Sbjct: 46 RETSRSKDREREKGRDKDRERDSEVSRRS---RDRD-GEKSKERSRDKDRDHRERHHRSS 101
Query: 656 DQEDQIRE 679
D RE
Sbjct: 102 RHRDHSRE 109
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 476 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLK 655
+ T RSK + E+ +D +RD+ ++ + DRD E S E +D E R
Sbjct: 46 RETSRSKDREREKGRDKDRERDSEVSRRS---RDRD-GEKSKERSRDKDRDHRERHHRSS 101
Query: 656 DQEDQIRE 679
D RE
Sbjct: 102 RHRDHSRE 109
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 476 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLK 655
+ T RSK + E+ +D +RD+ ++ + DRD E S E +D E R
Sbjct: 46 RETSRSKDREREKGRDKDRERDSEVSRRS---RDRD-GEKSKERSRDKDRDHRERHHRSS 101
Query: 656 DQEDQIRE 679
D RE
Sbjct: 102 RHRDHSRE 109
>At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 319
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 194 PFNNNQFLMEIHKPEPENAFNILQT 268
P+NN ++ ++I + +P NA +I++T
Sbjct: 151 PYNNKKYFIDIVETKPANAISIIET 175
>At5g54410.1 68418.m06777 hypothetical protein
Length = 219
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/80 (20%), Positives = 38/80 (47%)
Frame = +2
Query: 443 LLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAED 622
L + K EN +K+T+ K + EE+KD + ++ +++ + + E +D
Sbjct: 88 LTYKTKVENKLKKTQPEKDRAEEEEKDLTEEKKKDPTEEEEKDPTEEKKKEPAEE-KKKD 146
Query: 623 PPSNEIWQRLKDQEDQIREL 682
P + +++E +I+ +
Sbjct: 147 PTEEKKKDPAEEEELEIKRI 166
>At4g26290.1 68417.m03782 expressed protein
Length = 75
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 479 RTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSN 634
R+ERS EE+++ + +AS D + D ET E PS+
Sbjct: 2 RSERSSKGPFEEEEEEEEEEEASSVKSDEHIEIEDEDETFAEDPETPITPSS 53
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/111 (21%), Positives = 43/111 (38%)
Frame = +2
Query: 338 EDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEED 517
E+EE+ TKE S +Q + K + + K E +K +E K+K+ EED
Sbjct: 1158 ENEEKSETKEIES--SKSQKNEVDKKEKKSSKDQ----QKKKEKEMKESEEKKLKKNEED 1211
Query: 518 KDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQ 670
+ T + + K++ + T + K+ E+Q
Sbjct: 1212 RKKQTSVEENKKQKETKKEKNKPKDDKKNTTKQSGGKKESMESESKEAENQ 1262
>At1g55600.1 68414.m06364 WRKY family transcription factor similar
to SPF1 protein GI:484261 from [Ipomoea batatas];
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 485
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = +2
Query: 305 DSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFE--NLVK 478
D DD F EDE++Y + V ED + E+ + + Q ++E N++
Sbjct: 228 DDDDEDFQYEDEDEDQY--DQDQDVDEDEEEEKDEDNVALDDPQPPPPKRRRYEVSNMIG 285
Query: 479 RTERSKMKR----MEEDKDNSTD 535
T SK +R ME D+DN D
Sbjct: 286 ATRTSKTQRIILQMESDEDNPND 308
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 509 EEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQIR 676
+ED+ D +A+K R+ ET AED E +RL+ +E++ R
Sbjct: 200 KEDRQGKKDVKIKVAEKKVPKHVREKQETLARWKEAEDGKKKEEEERLRKEEEERR 255
>At4g00231.1 68417.m00026 ataxin-related contains weak similarity to
Ataxin-10 (Spinocerebellar ataxia type 10 protein)
(Brain protein E46 homolog) (Swiss-Prot:Q9UBB4) [Homo
sapiens]
Length = 475
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 275 ARTRDSSFSVDSDDNYFYALPED----EEEYLTKEFSSVYEDAQCERLSN 412
A T +S SV S ++Y+ L E+ Y K FS +YEDA+ E S+
Sbjct: 185 AETLRTSSSVGSVEDYWLKLLVSRICVEDGYFLKLFSKLYEDAENEIFSS 234
>At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat
(TPR)-containing protein contains Pfam profiles PF00564:
PB1 domain, PF00515: TPR Domain
Length = 751
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/103 (22%), Positives = 49/103 (47%)
Frame = +2
Query: 314 DNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERS 493
D Y L ++++ + Y AQ +S +E + + EAK ++ + E+
Sbjct: 569 DFYEGLLALGQQQFEMAKLHWSYLLAQKIDISGWDPSETLNLFDSAEAKMKDATEMWEKL 628
Query: 494 KMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAED 622
+ +RM++ K+ ++++ ++ K D +E ET TAE+
Sbjct: 629 EEQRMDDLKNPNSNKKEEVS-KRRKKQGGDGNEEVSETITAEE 670
>At1g23950.3 68414.m03023 expressed protein
Length = 368
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 530 TDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNE 637
T D SI+ K +++ + + ++ET T ++ PSNE
Sbjct: 250 TTTDKSISIKPEVLSKLEIVKVAIETATKDEEPSNE 285
>At1g23950.2 68414.m03022 expressed protein
Length = 373
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 530 TDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNE 637
T D SI+ K +++ + + ++ET T ++ PSNE
Sbjct: 255 TTTDKSISIKPEVLSKLEIVKVAIETATKDEEPSNE 290
>At5g61360.1 68418.m07699 expressed protein
Length = 210
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +2
Query: 242 ENAF-NILQTPSARTRDSSFSVDSDDNYFYALPEDEE-EYLTKEFSSVYEDAQCERLSNM 415
EN + N L++PS + SS S D+ F DE+ ++ K S ED ++
Sbjct: 46 ENLYVNGLESPSVSSSSSSSSSRLSDSSFSPSDSDEQFQFSRKSHSQPSEDVGKSPWKSV 105
Query: 416 TKNELIQEY--LLLE---AKFENLVKRTERSKM 499
+ ++IQ + +LL + F+NLV R+ +
Sbjct: 106 IEIDIIQGWWKILLARVMSNFQNLVTCFSRNSL 138
>At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 315
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +2
Query: 194 PFNNNQFLMEIHKPEPENAFNILQT 268
P+NN ++ ++I + +P N +I++T
Sbjct: 151 PYNNKKYFIDIVEAKPSNGISIIET 175
>At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 311
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +2
Query: 194 PFNNNQFLMEIHKPEPENAFNILQT 268
P+NN ++ ++I + +P N +I++T
Sbjct: 151 PYNNKKYFIDIVEAKPSNGISIIET 175
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/108 (18%), Positives = 44/108 (40%)
Frame = +2
Query: 359 TKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDR 538
TKE + ++ R + E E + E E + E+ + + E +++ +
Sbjct: 54 TKETAPATKETAPTRTEEPSLTEQDPENVEEEESEEEEKEEEEKEEEEEEEGEEEEEEEE 113
Query: 539 DASIADKDSMVTDRDTSETSVETFTAEDPPSNEIWQRLKDQEDQIREL 682
+ +++ V ++S+ S + + PP IW R + + R L
Sbjct: 114 EEEEKEEEENVGGEESSDDSTRSL-GKRPPPMRIWMRRHQLQWKFRRL 160
>At3g07530.1 68416.m00899 expressed protein ; expression supported
by MPSS
Length = 699
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 251 FNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFS 373
F+ LQ+ T D S DSD+NY + ++++ L E S
Sbjct: 284 FSSLQSAEV-TEDGCISPDSDNNYISTISDNKDSLLNTEDS 323
>At1g48110.1 68414.m05369 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 639
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -3
Query: 602 QQKSQMYLCQSPYYLYLQSTHLCQCYCLYLP-PFVSSSSAQSFLQGFQTLPLTEDILV*V 426
Q ++ Y+C +P Y Y QS + + Y+P + SA Q F ++P + +
Sbjct: 57 QNENSPYICYTPSYGYAQSPY--NPFNPYIPGASIGVDSAFVAPQQFYSIPPYQSVATSP 114
Query: 425 RFLSYLIDAHI 393
F+ Y I I
Sbjct: 115 TFVPYAIQPEI 125
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 482 TERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVE 604
TE+ + ++EDK + +ASI DK+ + D E V+
Sbjct: 166 TEKREPVVLKEDKALEYEEEASILDKEDHMDTEDVQEEEVD 206
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 476 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETF 610
KRT R + +R++ED + +R A+I S + D E +TF
Sbjct: 1532 KRTVRKRPERIDEDNSHLVNRMANIVRPKSEEVEEDEEEEE-QTF 1575
>At1g25380.1 68414.m03150 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 363
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 482 TERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVET 607
T RS +R EE++ N R DKD + + T + T
Sbjct: 314 TNRSDDRRREEERKNLVSRRGEEEDKDLGLRESQTQSNKIST 355
>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1353
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 386 DAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKD 562
D+ E L KNE + +L ++K L++ + ++ D+D RD + D+D
Sbjct: 365 DSFIEFLVQCEKNEGLLSGILTKSKSTYLLQGEGKYPQPSLDNDRDQEHKRDDGLRDRD 423
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,254,474
Number of Sequences: 28952
Number of extensions: 230149
Number of successful extensions: 1001
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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