Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0118
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       28   0.066
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.3  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 320 KTQHETRDGDVVQGSYSVVD-PDGTKRTVDYTAD 418
           + +  T DG +V G Y VV   DG+ R V YTAD
Sbjct: 206 RVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
 Frame = -1

Query: 139 CICD--WS-RMCGV----CRRNKACSNSRKCADQDSELEGHC 35
           CIC   W   +C +    C  N  C N+  C D+ ++ E +C
Sbjct: 92  CICKEGWEGALCNINTDDCSPNP-CRNNGSCVDRIADFECNC 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,087
Number of Sequences: 336
Number of extensions: 1707
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)