Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0118
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.5  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    27   3.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.7  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -1

Query: 568 SGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           +G   R G   GRG  +G  G   RGG FG  S  G G
Sbjct: 135 AGRGGRGGFRGGRGGSRGGFGGNSRGG-FGGGSRGGFG 171


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -1

Query: 586 SRVGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFG 479
           SR G G     R G + GRG   G  G G RGG  G
Sbjct: 7   SRGGRGGSRGGRGGFNGGRGGFGGGRG-GARGGGRG 41


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 580 VGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGN 476
           VG G+  ++ SG H     H G+ G   RGG +GN
Sbjct: 195 VGGGAYDYSSSGSHT----HGGSHGTEHRGGSYGN 225


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 257 YDAHPQYSFAYDVQDSLTGDSKT--QHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHN 427
           Y  + QY+   D++D  T D  T  +HE  D +V +   S+   +GT  TV+ T++  N
Sbjct: 206 YITNSQYNDTLDMEDQ-TSDLITTFEHENEDHEVHEVP-SIHGMEGTFETVNLTSEAGN 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,665
Number of Sequences: 5004
Number of extensions: 27813
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)