Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0118
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0213 - 15912048-15912716 32 0.52
06_01_0178 + 1386981-1387505 32 0.52
10_08_0223 - 15986763-15987575 31 0.69
12_01_0841 - 7873458-7874225 31 0.91
10_08_0239 - 16099673-16100251 31 0.91
10_08_0238 - 16093780-16094355 29 3.7
10_08_0220 - 15977247-15977804 29 3.7
10_08_0240 - 16106963-16107538 29 4.8
10_08_0241 - 16111792-16112367 28 6.4
07_03_0560 + 19479597-19480667 28 6.4
04_04_1416 - 33411900-33412148,33412735-33412854,33412986-334132... 28 6.4
07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445... 28 8.5
07_03_0559 + 19475893-19476783 28 8.5
07_03_0177 - 14770777-14772045 28 8.5
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 28 8.5
02_05_0149 + 26290236-26290880 28 8.5
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 28 8.5
>10_08_0213 - 15912048-15912716
Length = 222
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G+GSG + +G +G G G G G +GG +G+ S G G
Sbjct: 133 GYGSGYGSGAGGASGGGGGHGGGGGGGQGGGYGSGSGYGSG 173
>06_01_0178 + 1386981-1387505
Length = 174
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G G G G GRG G+ G G RGGD G+ G G
Sbjct: 92 GGGGGGGGGKGRKGGRGGDGGSGGAGGRGGDGGSGGQGGRG 132
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -1
Query: 571 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFG 479
G G SG GRG G+ G G RGGD G
Sbjct: 106 GRGGDGGSGGAGGRGGDGGSGGQGGRGGDGG 136
>10_08_0223 - 15986763-15987575
Length = 270
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G G G G +G G G G G+ GGD GN N G G
Sbjct: 42 GGGGGGGTNGGWGSGSGAGAGA-GYGESGGDSGNTWNYGRG 81
>12_01_0841 - 7873458-7874225
Length = 255
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 577 GHGSGMHNRSGVH-NGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G+GSG GVH G G G G G +GG G+ S G G
Sbjct: 205 GYGSGYGQGGGVHAGGYGQGGGGGGGGGQGGGSGSGSGYGSG 246
>10_08_0239 - 16099673-16100251
Length = 192
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = -1
Query: 580 VGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
+G GSG NR G H G G G Q GG G+ S G G
Sbjct: 54 IGAGSGSSNRYGAHASGGGGGGGGGYSQYGGS-GSGSGYGTG 94
>10_08_0238 - 16093780-16094355
Length = 191
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = -1
Query: 580 VGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
VG GSG N G H G G G Q GG G+ S G G
Sbjct: 54 VGAGSGSSNSYGAHASGGGGGGGGGYSQYGGS-GSGSGYGTG 94
>10_08_0220 - 15977247-15977804
Length = 185
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGT-CGVGQRGGDFGNFSNVGEG 455
G GSG G G G G+ G GQ GGD S GEG
Sbjct: 31 GGGSGEGGGGGSDGGSGWGSGSGSGYGQAGGDGSYASGGGEG 72
>10_08_0240 - 16106963-16107538
Length = 191
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -1
Query: 580 VGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
+G GSG N G H G G G Q GG G+ S G G
Sbjct: 54 IGAGSGSSNYYGAHASGGGGGGGGGYSQYGGS-GSGSGYGSG 94
>10_08_0241 - 16111792-16112367
Length = 191
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEGL 452
G GSG N G H G G G Q GG G+ S G GL
Sbjct: 55 GVGSGSSNYYGAHASGGGGGGGGGYSQYGGS-GSGSGYGTGL 95
>07_03_0560 + 19479597-19480667
Length = 356
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G G G+ G G G G G G +GG FG VG G
Sbjct: 119 GEGGGLGGGGGGGLGGGGGGGVGGGGGQGGGFGAGGGVGGG 159
>04_04_1416 -
33411900-33412148,33412735-33412854,33412986-33413235,
33413998-33414131
Length = 250
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 574 HGSGMHNRSGVHNGRGVHKGTCGVGQRGG 488
HG G H+ SG H G G G G G GG
Sbjct: 221 HGGGGHHFSGDHGGGGGCGGGGGCGGGGG 249
>07_03_0563 -
19542116-19542217,19542631-19542712,19543823-19544595,
19545207-19545296,19545612-19545689,19546112-19546207,
19546285-19546365,19546587-19546787,19546875-19546967,
19547052-19547116,19547684-19547715,19548844-19548956
Length = 601
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 571 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G H G +N R G G G GG G +N G G
Sbjct: 487 GGNKHKNGGRNNNRNSTSGRNGGGGNGGHPGEQNNDGSG 525
>07_03_0559 + 19475893-19476783
Length = 296
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G G G+ G G G G G G +GG FG VG G
Sbjct: 114 GAGGGLGGGGGGGFGGGSGGGVGGGGGQGGGFGAGGGVGGG 154
>07_03_0177 - 14770777-14772045
Length = 422
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 580 VGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
+G G G+ G+ G G+ G G GG FG +G G
Sbjct: 303 LGGGGGLGGGGGLGGGSGLGGGIGKGGGLGGSFGKGGGLGGG 344
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G G+GM + G GV G G G G G + VG G
Sbjct: 110 GVGTGMGTGTSTGTGTGVGTGGTGTGGAGVGAGTGTGVGTG 150
>02_05_0149 + 26290236-26290880
Length = 214
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G G G G G G H G G G GG G N G G
Sbjct: 108 GGGGGSGRAYGFGGGYGGHPGGFGGGGGGGGGGGGRNYGGG 148
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 278 SFAYDVQDSLTG--DSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHNGFNA 439
S +D Q+ G S + D DV G +++DP +K T + T + H GF++
Sbjct: 558 STIWDSQNDKAGPDSSAVVFDQYDSDV--GEENLLDPFSSKHTEEPTVEDHKGFSS 611
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,987
Number of Sequences: 37544
Number of extensions: 218769
Number of successful extensions: 1013
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -