Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0118
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)             29   3.7  
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)                 28   6.5  
SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)                 28   8.6  
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)              28   8.6  
SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   8.6  
SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 356  QGSYSVVDPDGTKRTVDYTADPHNGFNAVVHKEP 457
            +GSY   D DG +RT++Y +    G+    H  P
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAHTRP 1775


>SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGT-CGVGQRGGDFGNFSNVGEGL 452
           GHG+GM    G   G+GV +G   G+GQ  G  G    VG+G+
Sbjct: 196 GHGTGMGQGVGQGMGQGVGQGMGQGMGQGVGQ-GTGQGVGQGV 237



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGT-CGVGQRGGDFGNFSNVGEG 455
           GHG+G     G   G+GV +G   GVGQ  G  G    VG+G
Sbjct: 188 GHGTGRWTGHGTGMGQGVGQGMGQGVGQGMGQ-GMGQGVGQG 228


>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
          Length = 392

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 167 PEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRPGQRA*RPLLQ 30
           P+Q  P  Q    L Q    +PQ+Q+ L Q Q   P Q A  P  Q
Sbjct: 198 PKQQAPLPQQQAPLPQQQAPLPQQQAPLPQQQAPLPQQHAPLPQQQ 243



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 167 PEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRPGQRA*RP 39
           P+Q  P  Q    L Q    +PQ+ + L Q Q   P Q+A  P
Sbjct: 212 PQQQAPLPQQQAPLPQQQAPLPQQHAPLPQQQAPLPQQKAPLP 254


>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           G G G  N  G  NG G     CG G  GG+ G  +  G G
Sbjct: 38  GVGGGGGNGGGAGNGVGAGGCGCGGGNDGGNGGGGAGNGGG 78


>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
          Length = 1102

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 574  HGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
            +G+GM N +G+ NG G+  G  G+ + GG   N + +  G
Sbjct: 943  NGAGMENGAGMENGAGMENG-AGM-ENGGGMENGAGMENG 980


>SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 299 DSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH-NGFNAVVHKEPL 460
           DS++ ++   H + D DV     S+V PD      DY  + + + ++ V+  +P+
Sbjct: 229 DSVSKNNIPPHISEDADVASQVISLVSPDSMIEEGDYVLEAYTDSYDDVIIDQPI 283


>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
          Length = 1154

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 290 DVQDSLTGDSKTQHE---TRDGDVVQGSYSVVDPDGTKRTVDYTADPHNG 430
           DV+D      K++ E    +DG +++G+  VV P G KR ++   + H G
Sbjct: 664 DVKDPELLPYKSKREELSVQDGCILRGARVVVPPQGRKRVLEDLHEAHPG 713


>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
          Length = 492

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -1

Query: 256 FLDFSDRGDSGNFGEWGGVRYGTSVYEMXXXXXXXXXXSCICDWSRMCGVCRRNKACSNS 77
           FLDF  R D     E+GG ++ T V+               C W   C  CR  + C+  
Sbjct: 122 FLDF--RRDEEPANEYGG-QHSTDVFTQCATCRWVEQC-ATCRWVEQCATCRWVEQCATC 177

Query: 76  R 74
           R
Sbjct: 178 R 178


>SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 136 ICDWSRMCGVCRRNKACSNSRKCADQDSELE 44
           +C W +MCG  +R++ C +  +C D   E +
Sbjct: 171 MCGWEQMCGWEQRSR-CLDGSRCVDGSREAD 200


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/72 (22%), Positives = 27/72 (37%)
 Frame = +2

Query: 251 EEYDAHPQYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHNG 430
           ++Y  + + +  Y   ++   D  T HE  D D    + +  D      T D  AD +  
Sbjct: 573 DDYTTNDEEANNYKTNNNAPDDDTTNHEATDNDAPDHNTTYYDTPDDYTTNDEEADNYKT 632

Query: 431 FNAVVHKEPLAH 466
            N   + E   H
Sbjct: 633 NNDTTNHEAPHH 644


>SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 299 DSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH-NGFNAVVHKEPL 460
           DS++ ++   H + D DV     S+V PD      DY  + + + ++ V+  +P+
Sbjct: 102 DSVSKNNIPPHISEDADVASQVISLVSPDSMIEEGDYVLEAYTDSYDDVIIDQPI 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,006
Number of Sequences: 59808
Number of extensions: 237251
Number of successful extensions: 950
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)