Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0118
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 34 0.12
AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid deplete... 31 0.62
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 30 1.9
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 30 1.9
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical pr... 28 5.8
U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein. 28 5.8
AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical ... 28 5.8
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 28 5.8
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 28 7.6
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 28 7.6
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 28 7.6
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 28 7.6
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 28 7.6
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 583 RVGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
R GHG H+R G H G G H G+C G G G+ + G G
Sbjct: 271 RHGHGGSGHHRGGRHGGHGRH-GSCS-GSPRGRHGHGGHGGHG 311
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 583 RVGHGSGMHNRSGVHNGRGVHKGTCG-VGQRGGDFG 479
R GHG H+R G H G G H G G R G G
Sbjct: 320 RHGHGGSGHHRGGRHGGHGRHGSRSGSPGGRHGHGG 355
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -1
Query: 583 RVGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFG 479
R GHG +RSG GR H G G G R G G
Sbjct: 235 RRGHGGRHGSRSGSPGGRHGHGGHGGHGSRSGSPG 269
>AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid depleted
protein 6 protein.
Length = 573
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 583 RVGHGSGMHNRSGVHNG--RGVHKGTCGVGQRGGDFGNFSNVGEG 455
R G G RSG +G RG G G G RGGD G F G G
Sbjct: 509 RGGDRGGFRGRSGDRDGGFRGGFGGRGGGGFRGGDRGGFRGRGGG 553
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = -1
Query: 583 RVGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVG 461
R G+G G GRG G G G RGGDFG N G
Sbjct: 808 RGGYGGRGGGFGGTGRGRG--GGVFGGGGRGGDFGGSGNFG 846
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 272 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 445
QY+ A+ +D+ G Q + RD D + +YS +D +G T++ ++ D H G +
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810
Query: 446 HKEPLAHVAK 475
H A +A+
Sbjct: 811 HGVSAADLAE 820
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 272 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 445
QY+ A+ +D+ G Q + RD D + +YS +D +G T++ ++ D H G +
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810
Query: 446 HKEPLAHVAK 475
H A +A+
Sbjct: 811 HGVSAADLAE 820
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 272 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 445
QY+ A+ +D+ G Q + RD D + +YS +D +G T++ ++ D H G +
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810
Query: 446 HKEPLAHVAK 475
H A +A+
Sbjct: 811 HGVSAADLAE 820
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 272 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 445
QY+ A+ +D+ G Q + RD D + +YS +D +G T++ ++ D H G +
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810
Query: 446 HKEPLAHVAK 475
H A +A+
Sbjct: 811 HGVSAADLAE 820
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSN 467
G SG SG GRG + G G GG GN+ N
Sbjct: 832 GRSSGGSGGSGRGGGRGGYSRGHGGGSGGGQRGNYQN 868
>Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 251 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 424
E Y QY+F Y +++ S+ + + +E V ++ +DP R +D
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214
Query: 425 NGFNAVVHKEPLAHVAKVAKIAAPL 499
N V ++P+A A + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239
>U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein.
Length = 550
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 251 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 424
E Y QY+F Y +++ S+ + + +E V ++ +DP R +D
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214
Query: 425 NGFNAVVHKEPLAHVAKVAKIAAPL 499
N V ++P+A A + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239
>AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 251 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 424
E Y QY+F Y +++ S+ + + +E V ++ +DP R +D
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214
Query: 425 NGFNAVVHKEPLAHVAKVAKIAAPL 499
N V ++P+A A + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 577 GHGSGMH--NRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G G G +R G GRG +G G RGG G+F G G
Sbjct: 180 GGGGGFRGGDRGGFGGGRGGFRGGDRGGFRGGRGGDFGGRGRG 222
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
G GSG G ++ G G G G GG GN G+G
Sbjct: 805 GGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDG 845
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 547 GVHNGRGVHKGTCGVGQRGGDFGNFSNVG 461
G G G ++G G G RGG +GNF N G
Sbjct: 332 GGPGGPGGYRGGRG-GGRGGSYGNFGNRG 359
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 547 GVHNGRGVHKGTCGVGQRGGDFGNFSNVG 461
G G G ++G G G RGG +GNF N G
Sbjct: 335 GGPGGPGGYRGGRG-GGRGGSYGNFGNRG 362
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 547 GVHNGRGVHKGTCGVGQRGGDFGNFSNVG 461
G G G ++G G G RGG +GNF N G
Sbjct: 332 GGPGGPGGYRGGRG-GGRGGSYGNFGNRG 359
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 547 GVHNGRGVHKGTCGVGQRGGDFGNFSNVG 461
G G G ++G G G RGG +GNF N G
Sbjct: 335 GGPGGPGGYRGGRG-GGRGGSYGNFGNRG 362
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGT-CGVGQRGGD-FGNFSNVGEG 455
G G G N G G G GT G G+ GG FG SN G G
Sbjct: 155 GTGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSG 197
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGT-CGVGQRGGD-FGNFSNVGEG 455
G G G N G G G GT G G+ GG FG SN G G
Sbjct: 155 GTGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSG 197
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSN 467
G GSG R G RG +G G RGGD G S+
Sbjct: 19 GGGSGFTPRGGGGGFRGGDRGRSPGGFRGGDRGRSSS 55
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 577 GHGSGMHNRSGVHNGRGVHKGT-CGVGQRGGD-FGNFSNVGEG 455
G G G N G G G GT G G+ GG FG SN G G
Sbjct: 155 GTGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSG 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,808
Number of Sequences: 27780
Number of extensions: 171383
Number of successful extensions: 731
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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