Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0118
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    27   0.13 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.41 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.94 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 350 VVQGSYSVVDPDGTKRTVDYTADPHNGF 433
           V QGS S   PDG + ++ Y AD  NGF
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVAD-ENGF 96


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 268 MSVVFLDFSDRGDSGNFGEWGGVRYGTSV 182
           M V +  F+ R  +  +GEW GV +G  V
Sbjct: 472 MKVYYYFFTQRTSTNLWGEWMGVLHGDEV 500


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 592 DWSRVGHGSGMHNRSGVHNGRGVHKGTCGVGQRGGD 485
           D    G G G  +  G   GRG ++G  G   +  D
Sbjct: 74  DIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKD 109


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 347 DVVQGSYSVVDPDGTKRTVDYTADPHNGFNAVVHKEPLAHVAKVAKI 487
           ++   + S +DP  +  ++   A  H+G    V   P A V   AK+
Sbjct: 658 NLASANISQLDPYSSLLSITNLAAEHSGDYTCVAANPAAEVRYTAKL 704


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 173 EQPEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRP 60
           +Q  QHV   Q   + +Q  +   Q+Q   +Q Q   P
Sbjct: 428 QQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHWP 465


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 404 DYTADPHNGFNAVVHKEPLAHVAKVAKIAA 493
           DY   P   F+++   +P    AKV++IAA
Sbjct: 59  DYVTLPPEFFDSLWQPDPYFLNAKVSEIAA 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,995
Number of Sequences: 438
Number of extensions: 1801
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)