Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0118
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05440.2 68415.m00575 glycine-rich protein                          32   0.43 
At2g05440.1 68415.m00574 glycine-rich protein                          32   0.43 
At5g61660.1 68418.m07736 glycine-rich protein                          31   0.76 
At2g40950.1 68415.m05056 bZIP transcription factor family protei...    31   1.0  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    29   2.3  
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    29   3.1  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    29   3.1  
At4g15460.1 68417.m02363 glycine-rich protein                          29   4.0  
At2g05510.1 68415.m00583 glycine-rich protein                          29   4.0  
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    28   5.3  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    28   5.3  
At2g19000.1 68415.m02217 expressed protein                             28   5.3  
At5g61070.1 68418.m07663 histone deacetylase family protein (HDA...    27   9.3  
At5g46730.1 68418.m05757 glycine-rich protein                          27   9.3  
At4g01985.1 68417.m00265 expressed protein                             27   9.3  

>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFG 479
           GHG G  +  G HNG G H G  G G  GG +G
Sbjct: 52  GHGGGGGHGHGGHNGGGGH-GLDGYGGGGGHYG 83



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFG 479
           GHG G HN  G H   G   G    G  GG +G
Sbjct: 58  GHGHGGHNGGGGHGLDGYGGGGGHYGGGGGHYG 90


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFG 479
           GHG G  +  G HNG G H G  G G  GG +G
Sbjct: 52  GHGGGGGHGHGGHNGGGGH-GLDGYGGGGGHYG 83



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = -1

Query: 577 GHGSGMHNRSGVH-----NGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           GHG G HN  G H      G G H G  G G  GG  G++   G G
Sbjct: 58  GHGHGGHNGGGGHGLDGYGGGGGHYGG-GGGHYGGGGGHYGGGGGG 102


>At5g61660.1 68418.m07736 glycine-rich protein
          Length = 134

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVG 461
           G GSG    SG  +G G   G+ G G RGG +G  S  G
Sbjct: 70  GRGSGYGYGSGSGSGTGYGYGSGGGGARGGGYGYGSGNG 108


>At2g40950.1 68415.m05056 bZIP transcription factor family protein
           similar to AtbZIP transcription factor GI:17065880 from
           [Arabidopsis thaliana]; contains Pfam profile: bZIP
           transcription factor PF00170
          Length = 721

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 598 MVDWSRVGHGSGMHNRSGVHNGRGVHKG 515
           ++D SR G G+G+ N +G+H GR   +G
Sbjct: 419 VLDTSRSGAGTGVSNSNGMHRGRDSDRG 446


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +2

Query: 290 DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHNGF 433
           DV D  + D        D DVV     VV  D +    D T+D HNG+
Sbjct: 651 DVSDDPSNDVSDDTSDDDSDVVS---DVVSDDASNDDSDDTSDDHNGY 695


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKG--TCGVGQRGGDFGNFSNVGEG 455
           GHG G     G +   G + G  + G G  GG+FG +   G G
Sbjct: 239 GHGGGYGGPGGPYKSGGGYGGGRSGGYGGYGGEFGGYGGGGYG 281


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 559 HNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           H+ +G H+G     G CG G  GG  G     G G
Sbjct: 771 HHHAGYHHGGHHGGGGCGGGHHGGGGGGCGGCGGG 805


>At4g15460.1 68417.m02363 glycine-rich protein 
          Length = 148

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 607 TLMMVDWSRV---GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           TL++V+ + V   G G G H   GVH   G    + G G   G  G  ++VG G
Sbjct: 25  TLLLVNCTTVVAKGGGGGAHGGGGVHVSVGGAHASVGGGHASGG-GGHASVGGG 77


>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCG-VGQRGGDFGNFSNVGEG 455
           GHG G HN  G H   G   G  G  G  GG +G     G G
Sbjct: 60  GHGHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGG 101


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           G+G    +  G + GRG + G  G G RGG  G +     G
Sbjct: 35  GYGGRGASGGGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRG 75


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           G+G    +  G + GRG + G  G G RGG  G +     G
Sbjct: 35  GYGGRGASGGGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRG 75


>At2g19000.1 68415.m02217 expressed protein
          Length = 125

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 556 NRSGVHNGRGVHKGTCG-VGQRGGDFGNFSNVG 461
           ++SG H+G     G+ G  G  GG FG+  N G
Sbjct: 37  SKSGFHHGFSGFSGSSGGAGGAGGSFGDMMNAG 69


>At5g61070.1 68418.m07663 histone deacetylase family protein (HDA18)
           identical to HDA18 [Arabidopsis thaliana] GI:21105769;
           similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo
           sapiens}; contains Pfam profile PF00850: Histone
           deacetylase family
          Length = 682

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 610 KTLMMVDWSRVGHGSGMHNRSGVHNGR---GVHKGTCGVGQRGGDFGNFSNVGEG 455
           K +++VDW  + HG+G        +      VH+   G     GD G+F+ VGEG
Sbjct: 223 KKILIVDWD-IHHGNGTQKMFWKDSRVLIFSVHRHDHGSFYPFGDDGDFNMVGEG 276


>At5g46730.1 68418.m05757 glycine-rich protein 
          Length = 290

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           G G G     G + G G H G  G G  GG+ G +     G
Sbjct: 211 GGGGGGSGGGGAYGGGGAHGG--GYGSGGGEGGGYGGGAAG 249


>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = -1

Query: 577 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 455
           G G G   +SG   G GV  G    G  GG  G    +G G
Sbjct: 158 GGGKGRGGKSGGGAGGGVGGGVGAGGGAGGSVGAGGGIGSG 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,782,580
Number of Sequences: 28952
Number of extensions: 162638
Number of successful extensions: 622
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)