Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0117
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    28   1.3  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    28   1.3  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.9  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   5.1  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   8.9  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +1

Query: 13  CIMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 174
           C +  F+V  V V  A  LTDE+K  L K R +  S +   E+L  K     FK
Sbjct: 233 CAIVIFLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
 Frame = +1

Query: 166 DFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPN------AEDKLKVEKLIDA- 324
           DF  EN+   + +L + +  ++  KDG + +D+    + N      A +K K E   DA 
Sbjct: 84  DFMDENKENGRISLGLSVIVRVTIKDGAYHEDIGYGSIDNCRGKASAFEKCKKEGTTDAL 143

Query: 325 --CLANKGNS 348
              L N GNS
Sbjct: 144 KRALRNFGNS 153


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 16  IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 192
           I+ TF++FVV ++L + L      ++ K+ +  + +    E    KL  GD F+    P+
Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 52  VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 204
           V +  +TD    N+ +     L E   + + ++K KT DFK +   +  YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 428 IQPNRSIPH*C*IARTCLSRRYHDY 502
           + P  ++P  C   R C+S+ YH++
Sbjct: 26  VWPLVTVPRQCICLRWCISKEYHEF 50


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 338 LLARQASISFSTFNLSSALGTLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPV 159
           LL  Q  +S S F++S  +       SFL+FP  ++S  L      +  + SFS L SP 
Sbjct: 159 LLYHQIILSHSLFHISHLISFHFLFFSFLSFP--LLSFILFPCFSLFLSSNSFS-LASPF 215

Query: 158 FS 153
            S
Sbjct: 216 SS 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,626
Number of Sequences: 5004
Number of extensions: 53462
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)