Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0117
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   7.1  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)                 28   7.1  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   7.1  
SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)             27   9.4  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   27   9.4  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 289 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 417
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 193 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 62
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +1

Query: 229 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 357
           L +KD K +  V  A    AEDKL+VE LI A +      +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -3

Query: 408 SVLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFPVLGHQ 229
           SVL VF+V+   +IPG  V A  +V     N  + +++VF+     Q  ++L F +L  +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83

Query: 228 L 226
           +
Sbjct: 84  I 84


>SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)
          Length = 235

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = +1

Query: 40  VVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLK--TGDFKTE--NEPLKKYAL 207
           V  V+      +E +EN+    AD  S +  DE +VNK    T     +  N+P      
Sbjct: 28  VTGVISLYLFREELRENVADEVADVASRSLGDENVVNKANEVTKQVLQDIINDPETTRLA 87

Query: 208 CMLIKSQLMTKD-GKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSP 351
              + S L   D  K   ++ L  + N E + KV K+    L +  N P
Sbjct: 88  SNFVMSVLGQDDVRKSAVELTLFVLQNRETQAKVSKVAAQTLKDLINHP 136


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 141 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 28
           LF++F  G  E VG  F+     L CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343


>SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)
          Length = 283

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 307 EKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHTSLVLNSS 471
           +K++D  L ++      TA +YV+ YHE   KH+L   +H          V++S+
Sbjct: 197 KKIVDGILIDR-----YTAGSYVRHYHENKLKHSLISASHVQISGQQIGFVISSN 246


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 238 KDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK 402
           K+G+ +K+    K  N E ++KVE+    CLA   + P +TA       ++ +PK
Sbjct: 152 KEGEMEKEYPSCKFANRESEVKVER---TCLA---SLPVRTATTTTMVQNQDEPK 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,825,762
Number of Sequences: 59808
Number of extensions: 386338
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)