Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0117
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 34 0.095
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 34 0.095
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 34 0.095
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.51
Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 6.2
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 6.2
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 28 6.2
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 6.2
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 6.2
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 6.2
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 28 6.2
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 6.2
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 28 6.2
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 27 8.2
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 33.9 bits (74), Expect = 0.095
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K++ +DKLK E
Sbjct: 7325 KDDKLKQEADAKLKKEKDDKLKHE 7348
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7981 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8036
Query: 238 KDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 8037 KDDNFKQEANAKLQKEKDDKLKQEK 8061
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7429 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7484
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K+D +DKLK E
Sbjct: 7485 KDDKLKQDADAKLQKEKDDKLKQE 7508
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L K +++ LK A L K
Sbjct: 7525 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7580
Query: 238 KDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 7581 KDDNFKQEANAKLQKEKDDKLKQEK 7605
Score = 30.7 bits (66), Expect = 0.88
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + + D++L + K +++ LK+ A L K +
Sbjct: 8213 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8272
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 8273 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8301
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++ ++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7189 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7244
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K+D +DKLK E
Sbjct: 7245 KDDKLKQDADAKLQKEKDDKLKQE 7268
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + + D++L ++ K +++ K+ A L K +
Sbjct: 7541 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7600
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 7601 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7629
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K D + D++L + K +++ LK+ A L K +
Sbjct: 7773 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7832
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 7833 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7861
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + D++L + K +++ LK+ A L K +
Sbjct: 8229 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8288
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 8289 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8317
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 33.9 bits (74), Expect = 0.095
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K++ +DKLK E
Sbjct: 7345 KDDKLKQEADAKLKKEKDDKLKHE 7368
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 8001 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8056
Query: 238 KDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 8057 KDDNFKQEANAKLQKEKDDKLKQEK 8081
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7449 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7504
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K+D +DKLK E
Sbjct: 7505 KDDKLKQDADAKLQKEKDDKLKQE 7528
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L K +++ LK A L K
Sbjct: 7545 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7600
Query: 238 KDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 7601 KDDNFKQEANAKLQKEKDDKLKQEK 7625
Score = 30.7 bits (66), Expect = 0.88
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + + D++L + K +++ LK+ A L K +
Sbjct: 8233 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8292
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 8293 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8321
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++ ++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7209 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7264
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K+D +DKLK E
Sbjct: 7265 KDDKLKQDADAKLQKEKDDKLKQE 7288
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + + D++L ++ K +++ K+ A L K +
Sbjct: 7561 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7620
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 7621 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7649
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K D + D++L + K +++ LK+ A L K +
Sbjct: 7793 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7852
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 7853 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7881
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + D++L + K +++ LK+ A L K +
Sbjct: 8249 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8308
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 8309 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8337
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 33.9 bits (74), Expect = 0.095
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K++ +DKLK E
Sbjct: 7345 KDDKLKQEADAKLKKEKDDKLKHE 7368
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 8001 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8056
Query: 238 KDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 8057 KDDNFKQEANAKLQKEKDDKLKQEK 8081
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7449 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7504
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K+D +DKLK E
Sbjct: 7505 KDDKLKQDADAKLQKEKDDKLKQE 7528
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++K++ K AD + + D++L K +++ LK A L K
Sbjct: 7545 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7600
Query: 238 KDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 7601 KDDNFKQEANAKLQKEKDDKLKQEK 7625
Score = 30.7 bits (66), Expect = 0.88
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + + D++L + K +++ LK+ A L K +
Sbjct: 8233 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8292
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 8293 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8321
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 237
A A ++ ++ K AD + + D++L + K +++ LK+ A L K
Sbjct: 7209 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7264
Query: 238 KDGKFKKDVALAKVPNAEDKLKVE 309
KD K K+D +DKLK E
Sbjct: 7265 KDDKLKQDADAKLQKEKDDKLKQE 7288
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + + D++L ++ K +++ K+ A L K +
Sbjct: 7561 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7620
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
KD FK++ +DKLK EK
Sbjct: 7621 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7649
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K D + D++L + K +++ LK+ A L K +
Sbjct: 7793 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7852
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 7853 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7881
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 228
A A ++K++ K AD + D++L + K +++ LK+ A L K +
Sbjct: 8249 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8308
Query: 229 -LMTKDGKFKKDVALAKVPNAEDKLKVEK 312
DGK KK+ A+ KLK EK
Sbjct: 8309 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8337
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -2
Query: 475 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 362
RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical
protein T06D8.8 protein.
Length = 387
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +1
Query: 151 KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 315
+L +++ PL+ +C+ I + TKD K K L+K+ N +DK+ V +L
Sbjct: 61 RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119
Query: 316 -IDACLANK 339
I+A L NK
Sbjct: 120 EIEARLENK 128
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 172 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 312
K NE + A C+ K+QLM++ + KK + K + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 172 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 312
K NE + A C+ K+QLM++ + KK + K + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 324 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 446
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 324 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 446
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 109 DCLSETKADEQLVNKLKTGDFKTENEPLK 195
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 257 FLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 84
F + + C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 6 FFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 109 DCLSETKADEQLVNKLKTGDFKTENEPLK 195
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 31 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 183
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 324 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 446
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 43 VCVVLAQALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 186
V + LTD Q++NLK ++ ++ET + L N + +G F E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 31 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 183
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 27.9 bits (59), Expect = 6.2
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -1
Query: 302 FNLSSALGTLARATSFLNFPSLVISCDLISIHRA--YFFNGSFSVLKSPVFSLFTNCSSA 129
F S AL AT L+ LV S+ + Y F S +K + +LF CSS
Sbjct: 285 FAPSIALTYRTLATISLSNSLLVNILSAFSVRSSLTYLFRNSTRDVK--LVNLFRVCSSF 342
Query: 128 FVSERQSALCFFKFSFCSSVRA*AKTTQTTNTIKVFMMHS 9
+V S C F F ++R+ A+ ++ + FMM+S
Sbjct: 343 WVIF--SHTCLFSLHFTDTIRSVARKGESVVGWRNFMMNS 380
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 623 RRKLNFGSRSNMLQQLNKIYRTDID*S*NNNTIQDCNILRYNHDIV*INTSELFNTN 453
RRKL + ++Q NKI+ D N DC ++ N + T E+ N N
Sbjct: 276 RRKLTAAQKKRYMEQQNKIFEWTPDKPRNYRPKSDCTVIVKN-----LFTQEMMNKN 327
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,647
Number of Sequences: 27780
Number of extensions: 301428
Number of successful extensions: 1035
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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