Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0113
(665 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 170 1e-42
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 126 1e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 7e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 51 7e-07
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 42 6e-04
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 40 0.002
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 36 0.022
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 35 0.068
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 34 0.090
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 30 1.5
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 29 2.6
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 7.9
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 170 bits (413), Expect = 1e-42
Identities = 72/157 (45%), Positives = 112/157 (71%)
Frame = +3
Query: 153 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 332
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 333 IIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 512
++DAPGH+ F+ NMI+G + AD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 513 IVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 623
++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 126 bits (305), Expect = 1e-29
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +3
Query: 213 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 389
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTS
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTS 59
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (266), Expect = 7e-25
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +3
Query: 285 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISKNGQ 464
+D+ L +F+T +T++DAPGH+DFI NMITG + AD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 465 TREHALLAFTLGVKQLIVGVNKMD 536
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 215
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/110 (26%), Positives = 52/110 (47%)
Frame = +3
Query: 102 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 281
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 282 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTG 431
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/117 (25%), Positives = 52/117 (44%)
Frame = +3
Query: 252 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTG 431
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 432 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 602
QT EH + +K +++ NK+D + ++ ++++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 39.9 bits (89), Expect = 0.002
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
M K+ N+ VI HVD GKST T L+ K G I A + G+ F
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AAAKAGETRF-----T 56
Query: 249 DKLKAERERGITID---IALWKF--ETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLI 413
D K E++R ITI I+L+ E+ Y+T P R F+ N+I H D + +
Sbjct: 57 DTRKDEQDRCITIKSTAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEV 116
Query: 414 VAA 422
AA
Sbjct: 117 TAA 119
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 39.1 bits (87), Expect = 0.003
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Frame = +3
Query: 84 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 251
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 252 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG-TSHA-DCAVLIVAAG 425
E A E S +T ID GH ++K I G T H+ D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 426 TG 431
G
Sbjct: 231 AG 232
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 273 RGITI 287
RGIT+
Sbjct: 1987 RGITV 1991
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 36.3 bits (80), Expect = 0.022
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Frame = +3
Query: 90 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 242
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 243 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG-TSHA-DCAVLI 413
+ + G +D A E+SK +T ID GH ++K I G T H D A+L+
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFGMTGHVPDFAMLM 347
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 34.7 bits (76), Expect = 0.068
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = +3
Query: 276 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISK 455
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 456 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 596
QT+E A GV +I +NK+D P + P + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 34.3 bits (75), Expect = 0.090
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
Frame = +3
Query: 66 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 239
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 240 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVA 419
+ + L R G D+ +T++D PGH IK +I G A +I
Sbjct: 88 -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGE 128
Query: 420 AGTGEFEAGISKNGQTR 470
GT E G ++G+ +
Sbjct: 129 CGT--IEGGFGQSGKVK 143
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 327 VTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 506
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 507 QLIVGVNKMD 536
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -2
Query: 601 MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 449
+Y+D S L+S N L ++E IL TPT + + K C + P
Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855
Query: 448 IPASNSPVPAAT 413
+ NSP+P+ T
Sbjct: 856 VTNGNSPIPSGT 867
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 333 IIDAPGHRDFIKNMITGTSHADCAVLIV 416
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 278 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 138
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
>SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 327 VTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISKNG 461
+TIIDA ++ + + TSH C + A G+++A +G
Sbjct: 666 ITIIDANYPQNILDCFVVCTSHLLCITAVPGASPGDYDAASVGDG 710
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 408 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 584
++VAA EF A ++KNG ++ F G + QL +G + M+ TE P P FE++K
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424
Query: 585 EVSS 596
S
Sbjct: 425 RTVS 428
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 287 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 138
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,903,645
Number of Sequences: 59808
Number of extensions: 435124
Number of successful extensions: 1166
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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