Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0113
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   412   e-117
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   401   e-114
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   294   6e-82
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   261   5e-72
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    36   5e-04
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.0  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  412 bits (1015), Expect = e-117
 Identities = 195/199 (97%), Positives = 196/199 (98%)
 Frame = +3

Query: 69  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGT 428
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS ADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKK 180

Query: 609 IGYNPAAVAFVPISGWHGN 665
           IGYNPAAVAFVPISGWHG+
Sbjct: 181 IGYNPAAVAFVPISGWHGD 199


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  401 bits (987), Expect = e-114
 Identities = 189/199 (94%), Positives = 193/199 (96%)
 Frame = +3

Query: 69  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGT 428
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTS ADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKK 180

Query: 609 IGYNPAAVAFVPISGWHGN 665
           IGYN A+VAFVPISGWHG+
Sbjct: 181 IGYNTASVAFVPISGWHGD 199


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  294 bits (721), Expect = 6e-82
 Identities = 139/142 (97%), Positives = 140/142 (98%)
 Frame = +3

Query: 240 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVA 419
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS ADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 420 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 599
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 600 IKKIGYNPAAVAFVPISGWHGN 665
           IKKIGYNPAAVAFVPISGWHG+
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGD 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  261 bits (639), Expect = 5e-72
 Identities = 123/126 (97%), Positives = 124/126 (98%)
 Frame = +3

Query: 288 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISKNGQT 467
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS ADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 468 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 647
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 648 SGWHGN 665
           SGWHG+
Sbjct: 121 SGWHGD 126


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 32/109 (29%), Positives = 47/109 (43%)
 Frame = +3

Query: 327 VTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 506
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 507 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 653
            +IV +NK+D       + ++E  K  +   I+++G     V    + G
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELGGEIQCVKISALKG 293



 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 81  KTHINIVVIGHVDSGKST 134
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 90  INIVVIGHVDSGKST 134
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 312 TSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLI 413
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 312 TSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLI 413
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 532 WIPLNHHTASPDLRKSRRKY 591
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,948
Number of Sequences: 438
Number of extensions: 3857
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)