Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0111
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   5.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   5.7  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   7.6  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 257 AIAAPPPGHSSSCQQTRSSPKRAAQCSRVG 168
           A+ +P P   SSC  + +S   +  C   G
Sbjct: 227 ALESPNPASRSSCLGSNTSSMLSLNCLNTG 256


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 257 AIAAPPPGHSSSCQQTRSSPKRAAQCSRVG 168
           A+ +P P   SSC  + +S   +  C   G
Sbjct: 16  ALESPNPASRSSCLGSNTSSMLSLNCLNTG 45


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 257 AIAAPPPGHSSSCQQTRSSPKRAAQCSRVG 168
           A+ +P P   SSC  + +S   +  C   G
Sbjct: 16  ALESPNPASRSSCLGSNTSSMLSLNCLNTG 45


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 481 PICEDPEQDVIVS 519
           P CE+PE +++VS
Sbjct: 14  PECENPETELLVS 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,582
Number of Sequences: 336
Number of extensions: 3547
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)