Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0111
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 33 0.054
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 0.21
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 31 0.22
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch... 30 0.38
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 29 0.66
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 29 0.88
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.88
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 29 0.88
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 28 1.2
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 28 1.2
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 28 1.5
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 28 1.5
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.7
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 4.7
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 26 4.7
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 6.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 6.2
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 6.2
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 6.2
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 8.2
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 8.2
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 8.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.2
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 32.7 bits (71), Expect = 0.054
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 400 EKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEE---IS 570
E +DK EE ESKE D++ ET D+++ + + E+ D +T +++ E
Sbjct: 479 ETEDKVEETESKEADVKAKET-DSIE--VDDKEEKTDSKETADKVEQTDSKDTNEKPAKD 535
Query: 571 DNSDESEKQSRASFKLPKVKEQQ 639
DN + +EK + K K K ++
Sbjct: 536 DNKEANEKAEKVDSKDVKEKIEE 558
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 27.5 bits (58), Expect(2) = 0.21
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 289 DLARDFKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDL 447
D+A DF AD+ +D SN + L+N+S++ + LE+ E++
Sbjct: 251 DIASDFFSSPSADLEADDFTTLNNSNAGHLLQNLSNDNVSVSVKALENGNEEV 303
Score = 21.8 bits (44), Expect(2) = 0.21
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 559 EEISDNSDESEKQSRASFKLPKVKEQQL 642
EE+S+N S SRA +P K L
Sbjct: 301 EEVSNNHARSPHSSRACNTIPSNKNDGL 328
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 30.7 bits (66), Expect = 0.22
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +1
Query: 379 LKNMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNL 558
L + + E D +++ + +D ++E D+ E D + +P +
Sbjct: 68 LNMLEEPEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDLNMSEEPKHHDSSNKE 127
Query: 559 EEISDNSDESEKQSRASFKLPKVKEQQLYQNELP--CHDDTADR 684
DNS+ E +++ +FK+ + K ++NE P C D ++
Sbjct: 128 STNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQCDDSKIEK 171
>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 333
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 185 QCSRVGYSSPLETSAFGLNWSVDERRLKCGGIFFWKALSIQ 63
QC+RV + P+ET+ L VD + C G+ A SI+
Sbjct: 121 QCARVDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIK 161
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 29.1 bits (62), Expect = 0.66
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 244 GAAIAMRNVRHRTPADLARDFKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEE 423
G AI R R RD + + + ++I+E + L+ NE Q TEE
Sbjct: 93 GGAILFETWRARRKEKNRRDEVAEAILGLQHEIVRINEIMEKQFVLQKKK-NELQSSTEE 151
Query: 424 LESKEED 444
++S E+D
Sbjct: 152 IDSTEKD 158
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.88
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 517 SPPDPFSETCTQNLEEISDNSDES 588
SPPD T NL +S NSD+S
Sbjct: 134 SPPDTTRRNSTSNLSSVSTNSDKS 157
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 28.7 bits (61), Expect = 0.88
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 391 SDNEKQDKTEELESKEEDLRIIETCDTVDSPI 486
SD+ +Q T L S + +ETC+TVD I
Sbjct: 112 SDSTQQPPTNTLPSVSASSQSVETCETVDEDI 143
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 74 TLSKRIFHRISTFSHRRTNSIQKQTSPVVRNILLCCIGRLV 196
TLS R + + +F SI K+ SP+ N+ L CI RL+
Sbjct: 312 TLSLRFWLHVISFLWNDYESISKEISPIAINLTLDCI-RLI 351
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 151 SSGEEYPTLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKHYRLADM 330
+ E T +HWAA G +C LLE GG I +N+ ++P A ++ D+
Sbjct: 66 AQNESGNTAMHWAALNGHAEICKLLLEA-GGDPHI--KNIYEKSPIYEADIRNQQKVMDL 122
Query: 331 LSD 339
D
Sbjct: 123 FLD 125
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 478 SPICEDPEQDVIVSPPDPFSETCTQNLEEIS-DNSDESEKQSRASFKLPKVKEQQLY-QN 651
S I E+P +D + P P S +Q EE S S E+ S +LP ++ +Y ++
Sbjct: 313 SNIVENPSEDNLSPLPPPASGPYSQEEEETSLFKSQRKEENEEESKELP--EDSDIYGKD 370
Query: 652 ELPCHDDTA 678
P DD++
Sbjct: 371 SSPSSDDSS 379
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/75 (22%), Positives = 37/75 (49%)
Frame = -1
Query: 242 PPGHSSSCQQTRSSPKRAAQCSRVGYSSPLETSAFGLNWSVDERRLKCGGIFFWKALSIQ 63
P ++ + S RA++ +++ + P + + N S+DE R++ W +++Q
Sbjct: 125 PSSNTEDSSEESDSSSRASRLAKL-FRPPYDIIS---NLSLDEARIEASSQKRWILVNLQ 180
Query: 62 LSSCSLLVVLNPNVW 18
S+ VLN ++W
Sbjct: 181 TSTSFECQVLNRDLW 195
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 185 QCSRVGYSSPLETSAFGLNWSVDERRLKCGGI 90
QC+RV + P+ET+ L VD ++ C G+
Sbjct: 121 QCARVDPNVPIETTMKTLKGFVDSGKISCVGL 152
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 406 QDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDNSDE 585
+D + ES EE+ ET DS + ++ E + SE+ ++ E + SDE
Sbjct: 79 EDSESDSESSEEEE---ETESEEDSEVSDESESE-------SESESESEEESESEEESDE 128
Query: 586 SEKQSRASF-KLPKVKE 633
SE+ +SF K P+ +E
Sbjct: 129 SERSGPSSFLKKPEKEE 145
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 301 DFKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDS 480
D ++ +L++ LS +++S F N YY N K K S E+ ++ + DTV S
Sbjct: 171 DERNNQLSEALS-MLRLSPFVNNYY---PSYQNRKDGK-----SLMENRGVVLSVDTVTS 221
Query: 481 PICEDPEQ 504
PI + P++
Sbjct: 222 PISQSPKK 229
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +1
Query: 226 LECPGGGAAIAMRNVRHR-TPADLARDFKHYRLADMLSDHM--KISEFSNMYYYLKNMSD 396
LEC G +I + ++ T + YRL D S + ++S+ + L +++
Sbjct: 48 LECSDVGTSILANDRSYKCTSVPETAPHEIYRLVDSNSLQLVGRVSQKLQLRRELDSLTA 107
Query: 397 NEKQDKTEELESKEEDLRII 456
+++T+E + ++E+ RI+
Sbjct: 108 ERVKNRTQEAQKEKEEKRIV 127
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 400 EKQDKTEELESKEEDL-RIIETCDTVDSPICEDPEQDVI 513
EK++ +LESKEE + R + + SP+ E P+ I
Sbjct: 166 EKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKI 204
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 391 SDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPE 501
SDNE + +++ ++ ED++I ET V PE
Sbjct: 212 SDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPE 248
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 QKNIPPHFNLLSSTDQFNPKADVSSGEEYPTLLHWAARF-GLERVCWQLLECPGGG 246
Q N+ +LL+ D FN D + +E + G+ERVC +L GG
Sbjct: 865 QNNLKRPSDLLAFADAFNDVYDNAIFDESNQFKYGLINLSGIERVCNTILRIDSGG 920
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 6.2
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +1
Query: 391 SDNEKQDKT-EELESKEEDLR--IIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLE 561
++ E DK E L K D R +++ V +D ++ + +P + T +N E
Sbjct: 97 NNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAE 156
Query: 562 EISDNSDESEKQSRASFKLPKVKEQQLYQNEL 657
+SDE+E + + + QNE+
Sbjct: 157 SAKGSSDENEANTATAPSSNEANGVDKKQNEI 188
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 70 LNAFQKNIPPHFNLLSSTDQFNPKADVSSGEEYPTLLHWAARFGLERVCWQL 225
L F+ P N+ + + + + GE PTLL+ R L+R+C Q+
Sbjct: 108 LTDFEAFDPYDANIQRNMYRMDASGPANYGESKPTLLYTNQRDHLDRLCDQV 159
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 412 KTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDNSDESE 591
K E+E E++ + + I E EQ+ D E+ +++LEEIS + E
Sbjct: 7 KMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSVSPVE 66
Query: 592 KQSR 603
++ R
Sbjct: 67 EEPR 70
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 448 RIIETCDTVDSPICEDPEQDVIVS 519
RI+E C T + E+P++++I++
Sbjct: 525 RILERCSTSNGSTLEEPDRELIIA 548
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 331 LSDHMKISEFSNMYYYLKNMSDNEKQDKT--EELESKEEDLRIIETCDTVDSPICEDPEQ 504
L D++ + E +++Y + +NEK+ E+ +E+D E D DS + E+
Sbjct: 333 LDDNLDVQESLGIFHYDPDYEENEKKYDAIKHEILGEEDDDENEE--DEEDSEETSESEE 390
Query: 505 DVIVSPPDP 531
D V+ P
Sbjct: 391 DESVNDEKP 399
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.2
Identities = 22/103 (21%), Positives = 46/103 (44%)
Frame = +1
Query: 397 NEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDN 576
NEK + +ELE + + T D +D I + E+ + E ++
Sbjct: 1615 NEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEKL--------KENSANFDVKLKKV 1666
Query: 577 SDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIEN 705
E+E +S+A + + K + L QN++ ++T + + + + N
Sbjct: 1667 VAETEFRSKAKISVYEKKTRDL-QNKITQLEETIENLNKQLSN 1708
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,063
Number of Sequences: 5004
Number of extensions: 58215
Number of successful extensions: 262
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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