Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0110
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 273 2e-74
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 270 1e-73
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 42 1e-04
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.65
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 2.0
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.6
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 3.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 6.0
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 8.0
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 273 bits (669), Expect = 2e-74
Identities = 140/206 (67%), Positives = 167/206 (81%)
Frame = +3
Query: 87 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 266
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 267 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAII 446
KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116
Query: 447 NSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 626
GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+
Sbjct: 117 ACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEI 176
Query: 627 INAAKGSSNSYAIKXKDELGRVAKSN 704
INAAKGSSNSYAIK KDEL RVAKSN
Sbjct: 177 INAAKGSSNSYAIKKKDELERVAKSN 202
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 270 bits (663), Expect = 1e-73
Identities = 140/202 (69%), Positives = 163/202 (80%), Gaps = 3/202 (1%)
Frame = +3
Query: 108 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 278
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRF
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 279 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 458
RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GP
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120
Query: 459 REDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAA 638
REDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAA
Sbjct: 121 REDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAA 180
Query: 639 KGSSNSYAIKXKDELGRVAKSN 704
KGSSNSYAIK KDEL RVAKSN
Sbjct: 181 KGSSNSYAIKKKDELERVAKSN 202
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 41.5 bits (93), Expect = 1e-04
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Frame = +3
Query: 300 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 479
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSA 181
Query: 480 GRAGTVRRQAVDVSPLRRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 656
R + + +R A+ W+L E + K +++ + E+I +SN
Sbjct: 182 KRFNKSVEFPMPLKERQRRRIALQWIL----GECKSSSPKRLSDRIVKEIIAIRSKTSNC 237
Query: 657 YAIKXKDELGRVAKSN 704
+ K KD L R+ N
Sbjct: 238 F--KKKDHLHRMCLVN 251
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.65
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 359 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 457
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 381 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 533
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 123 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 266
+ ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 451 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 567
++PV R SVV V +P+ +H +S ++G Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 308 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 430
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 285 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 124
L N C+ LNE ++ + SL R P++ ++ R +S+ +K+ E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,969
Number of Sequences: 5004
Number of extensions: 58545
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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