Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0110
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   340   5e-94
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    29   2.4  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    29   2.4  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  340 bits (836), Expect = 5e-94
 Identities = 163/193 (84%), Positives = 175/193 (90%)
 Frame = +3

Query: 126 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 305
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 306 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 485
           RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 486 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAI 665
           AGTVRRQAVDV+PLRRVNQAIWLLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYAI
Sbjct: 137 AGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAI 196

Query: 666 KXKDELGRVAKSN 704
           K KDEL RVAKSN
Sbjct: 197 KKKDELERVAKSN 209


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 445 STLDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 618
           S  D + ++ G  V V  +  P   +    S  QSGF    HV++  EIL+Q+  V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTY-IRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 587 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 477
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 587 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 477
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 456 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 587 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 477
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 587 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 477
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 195 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -2

Query: 638 SCIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD----PS 471
           SC   F+ N    C N +EC  T +  + P  LVD   G   +  T   T   D    PS
Sbjct: 200 SCKKGFLRNRQGQCVNPTECPATGSTDENPCNLVDCRTGHQCSMSTGKPTCVPDYSDTPS 259

Query: 470 RIFTGSRVD 444
            +F G+  D
Sbjct: 260 PLFPGNGSD 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,254
Number of Sequences: 27780
Number of extensions: 345862
Number of successful extensions: 923
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)