Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0109
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   157   9e-40
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    27   2.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   3.7  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   4.9  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   4.9  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   8.5  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.5  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  157 bits (382), Expect = 9e-40
 Identities = 85/194 (43%), Positives = 125/194 (64%), Gaps = 2/194 (1%)
 Frame = +1

Query: 25  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 204
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 205 VMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGS-DT 378
           VM+ AAFS+AE  F  G+  N  + Q+V + ++++ SK++N++GV LP FE   D S D 
Sbjct: 61  VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120

Query: 379 YEXXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 558
           ++                 ++ AV+ LV+LAS Q++FV L +V+++TNRRVN+IEH+IIP
Sbjct: 121 FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIP 180

Query: 559 RLERTLAYIISELD 600
           RLE T+ YI SEL+
Sbjct: 181 RLENTIKYIESELE 194


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 356 HTRMVLIPMSWLVWLVVG 409
           +T + LI   WL+WLV+G
Sbjct: 222 YTGIALIAQHWLIWLVLG 239


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 225  ESSFFHHFTHKGFSLNDFAQDHTEPHL 145
            + SF+ HF H GF +  +     + HL
Sbjct: 1516 KKSFYKHFLHSGFPVESYLHKVLDNHL 1542


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 462 DQKLHSALEVLLQLCKXLPTTSQTSQLIGIRTILV*LKDWEG 337
           DQ   + LE L++LC    TT ++   +    I + LKD++G
Sbjct: 378 DQPNLTLLEYLIRLCALESTTQESVLQLPDEQIALYLKDYQG 419


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 466 LASLQTSFVTLDEVIKITNRRVNAIEHVII 555
           + SL       D+V+KI  +R   ++H++I
Sbjct: 81  MTSLNLFVTKFDQVLKILEKRAPTVDHILI 110


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 396 GSWWA-AXCKAEEELPERCEAFGRVSFTADFI 488
           G+WW    C  EEE+    +AFG    T + I
Sbjct: 304 GTWWLDVSCPKEEEIRVLAKAFGIHPLTVEDI 335


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 VTKAQIKIXSKKDNVAGVTLPIFESYQD 366
           +TK  +   + KD + G  +P F+ Y+D
Sbjct: 103 ITKKSLHNVASKDYIRGSHVPCFQPYED 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,244
Number of Sequences: 5004
Number of extensions: 42699
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)