Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0109
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1340 + 32766773-32767582 165 2e-41
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381... 33 0.23
07_03_0525 - 19044978-19045508 29 2.1
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 29 3.7
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 28 5.0
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 28 5.0
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672 28 6.5
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 28 6.5
12_01_1078 - 11202284-11202343,11202941-11203000,11203036-112030... 27 8.7
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 27 8.7
01_04_0088 + 15930755-15931174,15931262-15931321 27 8.7
>04_04_1340 + 32766773-32767582
Length = 269
Score = 165 bits (401), Expect = 2e-41
Identities = 95/202 (47%), Positives = 126/202 (62%), Gaps = 10/202 (4%)
Frame = +1
Query: 25 MSGK-DRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 201
MSG+ RL + P+ ++K RL GA +GH LLKKK+DAL V+FR IL KI+ K MG
Sbjct: 1 MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60
Query: 202 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQD---- 366
E M+ ++FSLAEAK+ GD VVLQ+V A +++ S ++NVAGV LP F + D
Sbjct: 61 EAMRASSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAG 120
Query: 367 ----GSDTYEXXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVN 534
+ + A+++LVELASLQTSF+TLDE IK TNRRVN
Sbjct: 121 SAGPSNASPSLTGLARGGQQVAACRAAHVKAIEVLVELASLQTSFLTLDEAIKTTNRRVN 180
Query: 535 AIEHVIIPRLERTLAYIISELD 600
A+E+V+ PRLE T++YI ELD
Sbjct: 181 ALENVVKPRLENTISYIKGELD 202
>07_03_1198 +
24734985-24735169,24737897-24737975,24738070-24738134,
24738214-24738313,24738429-24738470,24739062-24739100,
24739140-24739330,24739745-24739850
Length = 268
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +1
Query: 112 HGLLKKKADALQVRFRMILSKIIETKTL--MGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 285
+G+LK K DALQ R +L + ++T T+ + ++ + +SL K NQ++ +++
Sbjct: 95 YGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSL---KHIRSKKNQLLFESI 151
Query: 286 TKAQIKIXSKKD 321
++ Q K S K+
Sbjct: 152 SELQKKEKSLKN 163
>07_03_0525 - 19044978-19045508
Length = 176
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 91 LAGAVKGHGLLKKKADALQVRFRM--ILSKIIETKTLMG-EVMKEAAFSLA 234
LAGA G G +KK+A ++VR R+ I+S I T L +V+K + F +A
Sbjct: 110 LAGAGAGDGPVKKRAVRVRVRDRVGKIMSSISRTIHLTSRDVVKHSGFRVA 160
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 211 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTYE 384
K+A S + TTGD N +L+ ++ +D GVT+ E + +E
Sbjct: 205 KDAEASASAPPLTTGDGNSDILEETPSTSSELPDNQDYETGVTMSFDEQLKAFGSCHE 262
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 25 MSGKDRLAIFPSRGAQML--IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLM 198
M K +LA+F + A + IK R A V+ G + +A+ + + +KII +L+
Sbjct: 95 MRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLL 154
Query: 199 GEV 207
G V
Sbjct: 155 GNV 157
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 396 GSWWAAXCKAEEELPERCEAFGRVSFT 476
GSWW + +ELPE C R S T
Sbjct: 35 GSWWPGQILSADELPENCVVPPRSSGT 61
>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
Length = 629
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 25 MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQV 150
+ DRLAI P + + G L +V+G G+ +K +L V
Sbjct: 153 LGADDRLAIVPFHSSVVDATGLLEMSVEGRGVASRKVQSLAV 194
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 293 ALVTFCSTTWLKSPVVNLASAKEKAASFITSPI 195
+L TFCS ++ ++N AS KAA+ + +PI
Sbjct: 967 SLETFCSQNGIRLTLMNSASGFGKAATTLPTPI 999
>12_01_1078 -
11202284-11202343,11202941-11203000,11203036-11203050,
11203322-11204026
Length = 279
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 417 CKAEEELPERCEAFGRVSFTADFICHSRRGY 509
C A+ L RC+ GR+ F AD RGY
Sbjct: 114 CVAQVWLVGRCDGAGRMRFAADSDSELSRGY 144
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 232 AEAKF-TTGDFNQVVLQNVTKAQIKIXSKKD 321
AE+KF G N ++QN+T+ ++ + KKD
Sbjct: 25 AESKFGEEGVTNDAIMQNLTQTELLVKEKKD 55
>01_04_0088 + 15930755-15931174,15931262-15931321
Length = 159
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 192 GFSLNDFAQDHTEPHLKGISLLLEETMAFHCT 97
G + DF H +PH LL ++ +F CT
Sbjct: 103 GLTAGDFILGHAKPHKSWKKLLYKDEQSFVCT 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,811
Number of Sequences: 37544
Number of extensions: 284636
Number of successful extensions: 639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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