Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0109
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   1e-27
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)            31   0.54 
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)                 27   8.8  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               27   8.8  

>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score =  120 bits (288), Expect = 1e-27
 Identities = 60/96 (62%), Positives = 70/96 (72%)
 Frame = +1

Query: 313 KKDNVAGVTLPIFESYQDGSDTYEXXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFV 492
           +KDNVAGV LPIFE   DG+++YE                 +  AVKLLVELASLQTSFV
Sbjct: 2   RKDNVAGVLLPIFEPVSDGTNSYELTGLSRGGQQLSKCQEVYGKAVKLLVELASLQTSFV 61

Query: 493 TLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELD 600
           TLDE IK+TNRRVNAIEHVIIPR+E T++YI+ ELD
Sbjct: 62  TLDEAIKLTNRRVNAIEHVIIPRIENTVSYILGELD 97


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 406 HHEPNQPTHRYQNHPGMTQRLGG*HQQH 323
           +H+  Q THRY  HP +T R    HQQH
Sbjct: 232 YHQHPQVTHRYHQHPQVTHRY---HQQH 256



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 406 HHEPNQPTHRYQNHPGMTQRLGG*HQQ 326
           HH+  Q  HRY  HP +T R    HQQ
Sbjct: 424 HHQHPQVIHRYHQHPQVTHRY---HQQ 447



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 391 QPTHRYQNHPGMTQRLGG*HQQH 323
           Q THRY  HP +T R    H QH
Sbjct: 408 QVTHRYHQHPQLTHRY---HHQH 427


>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
          Length = 228

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 19  IKMSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRM---ILSKIIETK 189
           I+MSG+        RG  +LI     G   G GLLK  AD L   F +   ++  ++  +
Sbjct: 105 IQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVLNLLRVE 164

Query: 190 TLMGEVMKEAAF 225
            +  E+M E +F
Sbjct: 165 EINPEIMLEKSF 176


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 465 LDQKLHSALEVLLQLCKXLPTTSQTSQLIGIRTILV 358
           +D  + SA+E+ +  C+ + T   T  LIGI T+L+
Sbjct: 659 VDDLMTSAIELAMNECRWIKTDKSTLILIGIFTVLI 694


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = -1

Query: 584  MYASVRSSRGMITCSMALTRLFVILITSSRVTNEVCSEANSTKSFTALWKFFFSFAXCCP 405
            +Y SVR    +  CS A T LF     S RV + VCS     + FT L+  F      C 
Sbjct: 947  VYLSVRVCSPV--CSRAFTSLFACFPMSVRVCSPVCS-----RVFTCLFACFHLSVRVCS 999

Query: 404  P 402
            P
Sbjct: 1000 P 1000


>SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 990

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 261 QPSCATKCYQGSNQDXVQEGQCCW-CHP 341
           + SC+  C  G  +D    G+CCW C P
Sbjct: 831 ESSCSPVCPVGYIRDTKHAGKCCWSCSP 858


>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
          Length = 332

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 371 LIPMSWLVWLVVGSXLQS 424
           LIPMSW  WL + S LQS
Sbjct: 298 LIPMSWCSWLDLYSTLQS 315


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 267  LVEVSSCELSFSQRESSFFHH-FTHKGFSLNDFAQDHTEPHLKGISLLLE 121
            L  VS       ++E S  HH  T   F  +   Q+H++ +LKG  L+++
Sbjct: 1195 LYSVSEVHTPLCEKECSHQHHALTCLVFGASTQNQNHSDEYLKGFQLVVQ 1244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,328,767
Number of Sequences: 59808
Number of extensions: 327207
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)