Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0109
         (602 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069116-1|AAL39261.1|  246|Drosophila melanogaster GH12958p pro...   317   9e-87
AF218238-1|AAG13186.1|  246|Drosophila melanogaster vacuolar pro...   317   9e-87
AE013599-2075|AAF58126.1|  246|Drosophila melanogaster CG8186-PA...   317   9e-87
AL138972-6|CAB72289.1|  249|Drosophila melanogaster EG:BACR25B3....   297   7e-81
AE014298-411|AAG22401.2|  249|Drosophila melanogaster CG8310-PA ...   297   7e-81
AE013599-1430|AAF58545.1|  373|Drosophila melanogaster CG13167-P...   101   6e-22
AY075304-1|AAL68171.1|  373|Drosophila melanogaster AT31643p pro...   101   8e-22
AY069555-1|AAL39700.1|  639|Drosophila melanogaster LD28458p pro...    29   4.9  
AE014297-3277|AAF56101.2|  639|Drosophila melanogaster CG31365-P...    29   4.9  

>AY069116-1|AAL39261.1|  246|Drosophila melanogaster GH12958p
           protein.
          Length = 246

 Score =  317 bits (778), Expect = 9e-87
 Identities = 160/192 (83%), Positives = 170/192 (88%)
 Frame = +1

Query: 25  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 204
           MSGKDRL IFPSRGAQML+K RLAGA KGHGLLKKKADALQ+RFR+IL KIIETKTLMG+
Sbjct: 1   MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGD 60

Query: 205 VMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTYE 384
           VMKEAAFSLAEAKFT+GD NQVVLQNVTKAQIKI +KKDNVAGVTLP+FESYQDGSDTYE
Sbjct: 61  VMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTYE 120

Query: 385 XXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRL 564
                           N+QSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR+
Sbjct: 121 LAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRI 180

Query: 565 ERTLAYIISELD 600
           +RTLAYIISELD
Sbjct: 181 DRTLAYIISELD 192


>AF218238-1|AAG13186.1|  246|Drosophila melanogaster vacuolar
           proton-translocatingATPase subunit D protein.
          Length = 246

 Score =  317 bits (778), Expect = 9e-87
 Identities = 160/192 (83%), Positives = 170/192 (88%)
 Frame = +1

Query: 25  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 204
           MSGKDRL IFPSRGAQML+K RLAGA KGHGLLKKKADALQ+RFR+IL KIIETKTLMG+
Sbjct: 1   MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGD 60

Query: 205 VMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTYE 384
           VMKEAAFSLAEAKFT+GD NQVVLQNVTKAQIKI +KKDNVAGVTLP+FESYQDGSDTYE
Sbjct: 61  VMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTYE 120

Query: 385 XXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRL 564
                           N+QSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR+
Sbjct: 121 LAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRI 180

Query: 565 ERTLAYIISELD 600
           +RTLAYIISELD
Sbjct: 181 DRTLAYIISELD 192


>AE013599-2075|AAF58126.1|  246|Drosophila melanogaster CG8186-PA
           protein.
          Length = 246

 Score =  317 bits (778), Expect = 9e-87
 Identities = 160/192 (83%), Positives = 170/192 (88%)
 Frame = +1

Query: 25  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 204
           MSGKDRL IFPSRGAQML+K RLAGA KGHGLLKKKADALQ+RFR+IL KIIETKTLMG+
Sbjct: 1   MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGD 60

Query: 205 VMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTYE 384
           VMKEAAFSLAEAKFT+GD NQVVLQNVTKAQIKI +KKDNVAGVTLP+FESYQDGSDTYE
Sbjct: 61  VMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTYE 120

Query: 385 XXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRL 564
                           N+QSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR+
Sbjct: 121 LAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRI 180

Query: 565 ERTLAYIISELD 600
           +RTLAYIISELD
Sbjct: 181 DRTLAYIISELD 192


>AL138972-6|CAB72289.1|  249|Drosophila melanogaster EG:BACR25B3.4
           protein.
          Length = 249

 Score =  297 bits (729), Expect = 7e-81
 Identities = 148/192 (77%), Positives = 162/192 (84%)
 Frame = +1

Query: 25  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 204
           M+ KDRL IFPSRGAQ L+K RLAGA KGHGLLKKKADALQ+RFR+IL KIIETKTLMG+
Sbjct: 1   MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQ 60

Query: 205 VMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTYE 384
           VMKEAAFSLAE KFTTGD NQ+VLQNVTKAQIKI +KKDNVAGVTLPIFE Y DG DTYE
Sbjct: 61  VMKEAAFSLAEVKFTTGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYE 120

Query: 385 XXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRL 564
                           N+QSAV+LLV+LASLQTSFVTLD+VIK+TNRRVNAIEHVIIPR+
Sbjct: 121 LAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPRI 180

Query: 565 ERTLAYIISELD 600
            RT+ YIISELD
Sbjct: 181 NRTIEYIISELD 192


>AE014298-411|AAG22401.2|  249|Drosophila melanogaster CG8310-PA
           protein.
          Length = 249

 Score =  297 bits (729), Expect = 7e-81
 Identities = 148/192 (77%), Positives = 162/192 (84%)
 Frame = +1

Query: 25  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 204
           M+ KDRL IFPSRGAQ L+K RLAGA KGHGLLKKKADALQ+RFR+IL KIIETKTLMG+
Sbjct: 1   MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQ 60

Query: 205 VMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTYE 384
           VMKEAAFSLAE KFTTGD NQ+VLQNVTKAQIKI +KKDNVAGVTLPIFE Y DG DTYE
Sbjct: 61  VMKEAAFSLAEVKFTTGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYE 120

Query: 385 XXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRL 564
                           N+QSAV+LLV+LASLQTSFVTLD+VIK+TNRRVNAIEHVIIPR+
Sbjct: 121 LAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPRI 180

Query: 565 ERTLAYIISELD 600
            RT+ YIISELD
Sbjct: 181 NRTIEYIISELD 192


>AE013599-1430|AAF58545.1|  373|Drosophila melanogaster CG13167-PA
           protein.
          Length = 373

 Score =  101 bits (243), Expect = 6e-22
 Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 1/193 (0%)
 Frame = +1

Query: 25  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG- 201
           M+ +D L IFPSR   +++K R+  A +G GLLK+K DA+ ++ R  L +I   + + G 
Sbjct: 1   MAKRDILPIFPSRANSVIMKQRVLAARRGVGLLKRKRDAIDMKLRE-LRRIRFDQDMHGD 59

Query: 202 EVMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTY 381
           E M+ A FS+A+A     DF   ++     A + +   +  + GV L   E    G   +
Sbjct: 60  EAMRNAIFSMAKANLLGADFKPQMVSRSHVATVSLRRTEIKIVGVKLNTLELETKGVGAF 119

Query: 382 EXXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 561
                            ++  A+K LVE ASL+     L+     TN RVNA+EHV+IP 
Sbjct: 120 PLAGLSCGGMQVSRIRDSYTKALKALVEFASLEYQVRMLEAASLQTNMRVNALEHVVIPI 179

Query: 562 LERTLAYIISELD 600
           L+ T  YI  EL+
Sbjct: 180 LQNTYNYICGELE 192


>AY075304-1|AAL68171.1|  373|Drosophila melanogaster AT31643p
           protein.
          Length = 373

 Score =  101 bits (242), Expect = 8e-22
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 1/193 (0%)
 Frame = +1

Query: 25  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG- 201
           M+ +D L +FPSR   +++K R+  A +G GLLK+K DA+ ++ R  L +I   + + G 
Sbjct: 1   MAKRDILPVFPSRANSVIMKQRVLAARRGVGLLKRKRDAIDMKLRE-LRRIRFDQDMHGD 59

Query: 202 EVMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTY 381
           E M+ A FS+A+A     DF   ++     A + +   +  + GV L   E    G   +
Sbjct: 60  EAMRNAIFSMAKANLLGADFKPQMVSRSHVATVSLRRTEIKIVGVKLNTLELETKGVGAF 119

Query: 382 EXXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 561
                            ++  A+K LVE ASL+     L+     TN RVNA+EHV+IP 
Sbjct: 120 PLAGLSCGGMQVSRIRDSYTKALKALVEFASLEYQVRMLEAASLQTNMRVNALEHVVIPI 179

Query: 562 LERTLAYIISELD 600
           L+ T  YI  EL+
Sbjct: 180 LQNTYNYICGELE 192


>AY069555-1|AAL39700.1|  639|Drosophila melanogaster LD28458p
           protein.
          Length = 639

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -3

Query: 255 SSCELSFSQRESSFFHHFTHKG 190
           S CELSFSQRE    H  TH G
Sbjct: 514 SECELSFSQREVLKRHMDTHTG 535


>AE014297-3277|AAF56101.2|  639|Drosophila melanogaster CG31365-PA
           protein.
          Length = 639

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -3

Query: 255 SSCELSFSQRESSFFHHFTHKG 190
           S CELSFSQRE    H  TH G
Sbjct: 514 SECELSFSQREVLKRHMDTHTG 535


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,082,317
Number of Sequences: 53049
Number of extensions: 484434
Number of successful extensions: 1302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)