Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0109
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 270 CATKCYQGSNQDXVQEGQCCW 332
           C+  C  G  +  V   QCCW
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCW 607


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 353 SKIGRVTPATLSFLDXILI*ALVTFCST 270
           S+I ++  ATL + D   +  ++ FC T
Sbjct: 222 SEITQIQEATLVYKDGTNVMGMIVFCIT 249


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 210 HHFTHKGFSLNDFAQDHTEPHLKGI 136
           HH THKG  +      HT   L G+
Sbjct: 572 HHLTHKGKPIRMRIGIHTGMVLAGV 596


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 173 LLKIIRNLT*RASAFFLRRPWPFTAPAR 90
           L+  I ++      FFLR+ +PF  P++
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAFPFWLPSK 247


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 131 FFLRRPWPFTAPAR 90
           FFLR+ +PF  P++
Sbjct: 234 FFLRQAFPFWLPSK 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,401
Number of Sequences: 438
Number of extensions: 2632
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)