Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0109
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   175   2e-44
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    32   0.25 
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ...    28   5.5  
At1g12120.1 68414.m01404 expressed protein contains Pfam domain ...    28   5.5  
At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    27   7.2  
At3g19190.1 68416.m02436 expressed protein                             27   7.2  
At1g63720.1 68414.m07211 expressed protein similar to putative p...    27   9.6  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  175 bits (426), Expect = 2e-44
 Identities = 89/194 (45%), Positives = 129/194 (66%), Gaps = 2/194 (1%)
 Frame = +1

Query: 25  MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 201
           M+G++ RL + P+     ++K RL GA +GH LLKKK+DAL V+FR +L KI+  K  MG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 202 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDT 378
           ++MK ++F+L E K+  GD    VVL+NV +A +K+ S+ +N+AGV LP F+ + +G   
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 379 YEXXXXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 558
            +                 +  A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ P
Sbjct: 121 NDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180

Query: 559 RLERTLAYIISELD 600
           +LE T++YI  ELD
Sbjct: 181 KLENTISYIKGELD 194


>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1032

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 55  PSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLA 234
           PS+G      G + G + G GLL   A  +    R    +  + + L+G  +K   F+ +
Sbjct: 628 PSKGKNRT--GTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYS 685

Query: 235 EAKFTTGDFN 264
           E K  T DF+
Sbjct: 686 ELKSATQDFD 695


>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 257

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 406 HHEPNQPTHRYQNHPGMTQRLGG*HQQHCPSWT 308
           HH+P+ P H Y    G    L   H +H PSWT
Sbjct: 135 HHQPHDPHHIY----GF---LNNHHHRHYPSWT 160


>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
           PF05904: Plant protein of unknown function (DUF863)
          Length = 483

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 258 LQPSCATKCYQGSNQDXVQEGQCC 329
           LQPSC T+    + +D ++E  CC
Sbjct: 278 LQPSCRTRLEFTNTEDLLEENGCC 301


>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 240 SFSQRESSFFHHFTHKGF--SLNDFAQDHTEPHLKGI 136
           SFS R SS     T   F  S++ FAQD+  PH + I
Sbjct: 21  SFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERI 57


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 485 EVCSEANSTKSFTALWKFFFSFAXCCPPRAKPANS*VSEPSWYDSKIGRVTPATLS 318
           EV  + ++ + F  LWK F SF   C P    ++     P+   + +    PATLS
Sbjct: 309 EVRFQPSTIRWFLQLWKTFTSFGSDCFPSVSHSDFLTDSPT-IPTNVMVTPPATLS 363


>At1g63720.1 68414.m07211 expressed protein similar to putative
           protein GB:CAA18164 [Arabidopsis thaliana]
          Length = 358

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = -1

Query: 476 SEANSTKSFTALWKFFFSFAXCCPPRAKPANS*VSE-PSWYDSKIGRVTPATLSFLDXIL 300
           S +NST S +       +     PP + PA+   SE PS   S +G ++ + L   +   
Sbjct: 72  SSSNSTTSNSGYRSVITTLPFIAPP-SSPASFFQSEPPSATQSPVGILSFSPLPCNNRPS 130

Query: 299 I*ALVTFCSTTWLKSPVVNLASAKEKAASFITSPI 195
           I A+  +   T L SP V      E +++ IT P+
Sbjct: 131 IFAIGPYAHETQLVSPPVFSTYTTEPSSAPITPPL 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,925
Number of Sequences: 28952
Number of extensions: 228879
Number of successful extensions: 569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)