Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0108
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0332 + 2621058-2621348,2621505-2622263                           31   0.80 
11_03_0004 + 8869629-8870774                                           31   1.1  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    31   1.1  
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962...    29   2.4  
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571...    28   5.6  
05_05_0278 - 23786507-23786875,23787191-23787315,23787499-237876...    27   9.8  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    27   9.8  

>03_01_0332 + 2621058-2621348,2621505-2622263
          Length = 349

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 233 ENSFKIPIQTSRHSNIARSEQGCQINLCDILPPPPYESPENRHN 364
           E S+++     RH + AR  +      C++LPPPPY    N++N
Sbjct: 113 EVSYQVEAFVYRHPSPARYSRTWH---CELLPPPPYLHEPNKYN 153


>11_03_0004 + 8869629-8870774
          Length = 381

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 80  DNVQNEINVLEDDCGSCHTNRSGSRS 157
           DNV+N IN L DDC  C  N+  S S
Sbjct: 3   DNVENYINFLSDDCLICIFNKLESES 28


>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
            11952016-11952314,11953743-11956795
          Length = 1273

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 164  PVYSSIQICSCGKNRSRPPRH*FHSVHCRVLALCSLWSI 48
            P+   IQI +C +  S P  +  H VH   L +C  W++
Sbjct: 1124 PMIKVIQISNCEELASLPTNNLVHFVHLEDLEICHCWNL 1162


>06_03_0138 +
           17093196-17093325,17095704-17095804,17096224-17096292,
           17096403-17097650,17097763-17097871,17099459-17099655,
           17099732-17099842,17099927-17100079
          Length = 705

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 68  ELRHDNVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDY 208
           E+R++ V   IN  E   G  +    G+  R+   +  PA+D  Y+Y
Sbjct: 22  EIRYEGVLYTINTEESSIGLRNVRSFGTEGRKKDGQQIPASDKIYEY 68


>09_03_0166 +
           12956794-12956832,12956936-12956977,12957084-12957149,
           12957237-12957350,12957435-12957515,12957613-12957690,
           12958702-12958784,12959645-12959726,12959801-12959901,
           12960016-12960055,12960162-12960221,12960302-12960348,
           12960437-12960575,12960716-12960931,12961010-12961344,
           12961525-12961596,12962449-12962589,12962680-12962716,
           12962837-12963256
          Length = 730

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +3

Query: 492 EFTFLVESRCSDDDVV*LNSEIK-----NKLDVSDVSEALVTDFFDNV 620
           +FTF  E  C DDDV+   S+IK       LD+  +   L  +F++ V
Sbjct: 369 DFTFPCEGSCEDDDVL-TESKIKAFLDEKALDLKKLQTPLYEEFYNTV 415


>05_05_0278 -
           23786507-23786875,23787191-23787315,23787499-23787664,
           23787844-23787979,23788286-23788378,23788505-23788611,
           23788719-23788905,23789616-23789722,23789811-23790065,
           23791241-23791306,23791363-23791401
          Length = 549

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 65  RELRHDNVQNEINVLEDDCGSCHTNRS 145
           R  R   +Q  IN+ ED+C  CH+ R+
Sbjct: 91  RATRLKRLQTPINLFEDECVFCHSFRT 117


>03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,
            4820038-4820723,4821009-4821147,4821378-4821514,
            4821805-4822077,4822175-4822382,4822660-4822731,
            4823230-4823460,4824269-4824532,4825127-4825268,
            4825355-4825467
          Length = 1085

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 78   TTMYRMKLMSWRTTAVLATRTDLDRG 155
            TT+Y++KLM W +  ++    +L +G
Sbjct: 987  TTVYQLKLMIWESLGIVKENQELHKG 1012


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,127
Number of Sequences: 37544
Number of extensions: 281213
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)