Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0108
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)                    32   0.35 
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2)                   28   7.6  
SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)                 28   7.6  

>SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)
          Length = 407

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = +2

Query: 95  EINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDYPQW-HWLGRENSFKIPIQTSRH 271
           ++ V  DDC    T  +     + +S +C    +  ++  W +W G   + K      R 
Sbjct: 243 QVTVQSDDCSKVPTVCTQKPETEKRSDMCSCKTVSCEWGAWGNWSGLCGTVK------RQ 296

Query: 272 SNIARSEQGCQINLCDILPPPPYESPENRHN 364
             I ++++  Q   CD LP    ++PE   N
Sbjct: 297 RKIVQTDKVVQKESCDGLPTKCTQTPEEETN 327


>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -1

Query: 158 YSSIQICSCGKN-----RSRPPRH*FHSVHCRVLALCSLWSIYSKYC 33
           + S +  SCGK+     R     H FH   C V A+C++W  +  YC
Sbjct: 240 FESNRCDSCGKSVDILERVAVENHVFHKA-CFVCAICNVWLNHFNYC 285


>SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2)
          Length = 597

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 567 ICFLFLNSI-TLRRHRYSDFLLKM*ILLDFIINYLIFKIHKKIGKHYCFT 421
           +C+  +  I T RRH Y   LL   I  D II +  +  H+      CFT
Sbjct: 205 LCYTTIGVINTKRRHHYVSLLLVSSIRKDVIIMFHYYWCHQYEKTSLCFT 254


>SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)
          Length = 330

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 125 SCHTNRSGSRSRQDK--SKVCPAADLDYDYPQWHWL 226
           SC +N +   +R D   SKV P A +  ++P+W W+
Sbjct: 11  SCFSNFTKHENRTDTKGSKVNPYAAVFLNFPEWLWI 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,917
Number of Sequences: 59808
Number of extensions: 323206
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)