Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0108
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127339-1|BAC86936.1|  286|Homo sapiens protein ( Homo sapiens ...    34   0.51 
BC117462-1|AAI17463.1|  282|Homo sapiens neuroplastin protein.         31   3.6  
BC105979-1|AAI05980.1|  282|Homo sapiens neuroplastin protein.         31   3.6  
AF109127-1|AAD43218.1|  282|Homo sapiens stromal cell-derived re...    31   3.6  
AF109126-1|AAD43217.1|  398|Homo sapiens stromal cell-derived re...    31   3.6  
AF035287-1|AAB88179.1|  154|Homo sapiens protein ( Homo sapiens ...    31   3.6  
AB209812-1|BAD93049.1|  391|Homo sapiens stromal cell derived fa...    31   3.6  

>AK127339-1|BAC86936.1|  286|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45410 fis, clone BRHIP3032311. ).
          Length = 286

 Score = 33.9 bits (74), Expect = 0.51
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -1

Query: 317 HIDLFDSPAPTSRCSNVCSFGWEF*SCSPVPANAIGDSRNLNQRPDKLCFCPVYSSIQIC 138
           H+    +  P S    VCS GW    C PVPA +   + +L      + FCP  + +  C
Sbjct: 136 HVSEVGNLQPPSHSLQVCSGGW---GCVPVPAVSPWVAGHLLSGGKLMHFCPARTGVSTC 192

Query: 137 S 135
           S
Sbjct: 193 S 193


>BC117462-1|AAI17463.1|  282|Homo sapiens neuroplastin protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +2

Query: 83  NVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPI-Q 259
           N   E+    D  G  H         QD +  C +  + Y +P W W  +EN   + I  
Sbjct: 113 NATIEVKAAPDITG--HKRSENKNEGQDATMYCKS--VGYPHPDWIWRKKENGMPMDIVN 168

Query: 260 TSRHSNIARSEQGCQINLCDI 322
           TS    I   E   ++N+ ++
Sbjct: 169 TSGRFFIINKENYTELNIVNL 189


>BC105979-1|AAI05980.1|  282|Homo sapiens neuroplastin protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +2

Query: 83  NVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPI-Q 259
           N   E+    D  G  H         QD +  C +  + Y +P W W  +EN   + I  
Sbjct: 113 NATIEVKAAPDITG--HKRSENKNEGQDATMYCKS--VGYPHPDWIWRKKENGMPMDIVN 168

Query: 260 TSRHSNIARSEQGCQINLCDI 322
           TS    I   E   ++N+ ++
Sbjct: 169 TSGRFFIINKENYTELNIVNL 189


>AF109127-1|AAD43218.1|  282|Homo sapiens stromal cell-derived
           receptor-1 alpha protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +2

Query: 83  NVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPI-Q 259
           N   E+    D  G  H         QD +  C +  + Y +P W W  +EN   + I  
Sbjct: 113 NATIEVKAAPDITG--HKRSENKNEGQDATMYCKS--VGYPHPDWIWRKKENGMPMDIVN 168

Query: 260 TSRHSNIARSEQGCQINLCDI 322
           TS    I   E   ++N+ ++
Sbjct: 169 TSGRFFIINKENYTELNIVNL 189


>AF109126-1|AAD43217.1|  398|Homo sapiens stromal cell-derived
           receptor-1 beta protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +2

Query: 83  NVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPI-Q 259
           N   E+    D  G  H         QD +  C +  + Y +P W W  +EN   + I  
Sbjct: 229 NATIEVKAAPDITG--HKRSENKNEGQDATMYCKS--VGYPHPDWIWRKKENGMPMDIVN 284

Query: 260 TSRHSNIARSEQGCQINLCDI 322
           TS    I   E   ++N+ ++
Sbjct: 285 TSGRFFIINKENYTELNIVNL 305


>AF035287-1|AAB88179.1|  154|Homo sapiens protein ( Homo sapiens
           clone 23742 mRNA, partial cds. ).
          Length = 154

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +2

Query: 83  NVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPI-Q 259
           N   E+    D  G  H         QD +  C +  + Y +P W W  +EN   + I  
Sbjct: 46  NATIEVKAAPDITG--HKRSENKNEGQDATMYCKS--VGYPHPDWIWRKKENGMPMDIVN 101

Query: 260 TSRHSNIARSEQGCQINLCDI 322
           TS    I   E   ++N+ ++
Sbjct: 102 TSGRFFIINKENYTELNIVNL 122


>AB209812-1|BAD93049.1|  391|Homo sapiens stromal cell derived
           factor receptor 1 isoform b variant protein.
          Length = 391

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +2

Query: 83  NVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPI-Q 259
           N   E+    D  G  H         QD +  C +  + Y +P W W  +EN   + I  
Sbjct: 283 NATIEVKAAPDITG--HKRSENKNEGQDATMYCKS--VGYPHPDWIWRKKENGMPMDIVN 338

Query: 260 TSRHSNIARSEQGCQINLCDI 322
           TS    I   E   ++N+ ++
Sbjct: 339 TSGRFFIINKENYTELNIVNL 359


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,824,071
Number of Sequences: 237096
Number of extensions: 1454833
Number of successful extensions: 3256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3256
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)