Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0108
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2293|AAF55378.1|  623|Drosophila melanogaster CG4009-PA...    30   3.1  
AE014134-1211|AAF52472.1| 3396|Drosophila melanogaster CG9138-PA...    29   4.1  
BT001256-1|AAN71012.1|  383|Drosophila melanogaster AT01668p pro...    29   7.2  
AY094720-1|AAM11073.1|  367|Drosophila melanogaster GH18838p pro...    29   7.2  
AE014297-366|AAN14327.1|  187|Drosophila melanogaster CG10999-PC...    29   7.2  
AE014297-364|AAN14325.1|  383|Drosophila melanogaster CG10999-PB...    29   7.2  
AE014297-363|AAF51947.1|  383|Drosophila melanogaster CG10999-PA...    29   7.2  

>AE014297-2293|AAF55378.1|  623|Drosophila melanogaster CG4009-PA
           protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 239 CSPVPANAIGDSRNLNQRP-DKLCFCPVYSSIQICSCGKNRSRPPRH*FHSVHCRVLAL 66
           C   P N + D+RNL+ R  D  C   +Y    I      R  PPR    + + R+++L
Sbjct: 79  CGVPPRNCLNDTRNLHYRTLDGSCNNLLYPEFGIAVSRYRRLLPPRQVEQAPNARLISL 137


>AE014134-1211|AAF52472.1| 3396|Drosophila melanogaster CG9138-PA
            protein.
          Length = 3396

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 194  LDYDYPQWHWLGRENSFKIPIQTSRHSNIAR 286
            +D  Y    + G +N+FK+  QT RH N+ R
Sbjct: 1037 VDTRYQSSFFFGCQNTFKLAGQTGRHDNVVR 1067


>BT001256-1|AAN71012.1|  383|Drosophila melanogaster AT01668p
           protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 146 GSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGCQINLCDIL 325
           G+R+R   S       L     + +W  +   F   IQ+ R +   ++       L D+ 
Sbjct: 278 GNRNRSTYSSAAQQKGLTTGVKKNNWRKKHEDF---IQSIRAAKQVKAHLARGGKLSDLP 334

Query: 326 PPPPYESPE 352
           PPPP E+P+
Sbjct: 335 PPPPSENPD 343


>AY094720-1|AAM11073.1|  367|Drosophila melanogaster GH18838p
           protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 146 GSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGCQINLCDIL 325
           G+R+R   S       L     + +W  +   F   IQ+ R +   ++       L D+ 
Sbjct: 262 GNRNRSTYSSAAQQKGLTTGVKKNNWRKKHEDF---IQSIRAAKQVKAHLARGGKLSDLP 318

Query: 326 PPPPYESPE 352
           PPPP E+P+
Sbjct: 319 PPPPSENPD 327


>AE014297-366|AAN14327.1|  187|Drosophila melanogaster CG10999-PC,
           isoform C protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 146 GSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGCQINLCDIL 325
           G+R+R   S       L     + +W  +   F   IQ+ R +   ++       L D+ 
Sbjct: 82  GNRNRSTYSSAAQQKGLTTGVKKNNWRKKHEDF---IQSIRAAKQVKAHLARGGKLSDLP 138

Query: 326 PPPPYESPE 352
           PPPP E+P+
Sbjct: 139 PPPPSENPD 147


>AE014297-364|AAN14325.1|  383|Drosophila melanogaster CG10999-PB,
           isoform B protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 146 GSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGCQINLCDIL 325
           G+R+R   S       L     + +W  +   F   IQ+ R +   ++       L D+ 
Sbjct: 278 GNRNRSTYSSAAQQKGLTTGVKKNNWRKKHEDF---IQSIRAAKQVKAHLARGGKLSDLP 334

Query: 326 PPPPYESPE 352
           PPPP E+P+
Sbjct: 335 PPPPSENPD 343


>AE014297-363|AAF51947.1|  383|Drosophila melanogaster CG10999-PA,
           isoform A protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 146 GSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGCQINLCDIL 325
           G+R+R   S       L     + +W  +   F   IQ+ R +   ++       L D+ 
Sbjct: 278 GNRNRSTYSSAAQQKGLTTGVKKNNWRKKHEDF---IQSIRAAKQVKAHLARGGKLSDLP 334

Query: 326 PPPPYESPE 352
           PPPP E+P+
Sbjct: 335 PPPPSENPD 343


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,862,129
Number of Sequences: 53049
Number of extensions: 475923
Number of successful extensions: 1343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)