Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0108
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    34   0.10 
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    34   0.10 
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    34   0.10 
U39997-3|AAK68389.1|  498|Caenorhabditis elegans Human daz (dele...    29   3.8  
AB025253-1|BAA88577.1|  499|Caenorhabditis elegans DAZ-1 protein.      29   3.8  
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical protein
            F02A9.6 protein.
          Length = 1295

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = +2

Query: 122  GSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGC 301
            GS  T  S + SR+      P +D  +  P  H+     S    ++TS    +   E   
Sbjct: 1198 GSRKTPTSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPNRMETSPEY-MFNHEMAP 1256

Query: 302  QINLCDILPPPPYESPENRH 361
             +N      PPPY+ P  RH
Sbjct: 1257 PVNAMWYTTPPPYQDPNYRH 1276


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical protein
            F02A9.6 protein.
          Length = 1295

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = +2

Query: 122  GSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGC 301
            GS  T  S + SR+      P +D  +  P  H+     S    ++TS    +   E   
Sbjct: 1198 GSRKTPTSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPNRMETSPEY-MFNHEMAP 1256

Query: 302  QINLCDILPPPPYESPENRH 361
             +N      PPPY+ P  RH
Sbjct: 1257 PVNAMWYTTPPPYQDPNYRH 1276


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.elegans
            glp-1 gene,complete cds. ).
          Length = 1295

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = +2

Query: 122  GSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGC 301
            GS  T  S + SR+      P +D  +  P  H+     S    ++TS    +   E   
Sbjct: 1198 GSRKTPTSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPNRMETSPEY-MFNHEMAP 1256

Query: 302  QINLCDILPPPPYESPENRH 361
             +N      PPPY+ P  RH
Sbjct: 1257 PVNAMWYTTPPPYQDPNYRH 1276


>U39997-3|AAK68389.1|  498|Caenorhabditis elegans Human daz (deleted
           in azoospermia)homolog protein 1 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 203 DYPQWHWLGR-ENSFKIPIQTSRHSNIARSEQGCQ 304
           ++ Q H +G  EN+F +P+Q  R    +R    CQ
Sbjct: 408 NFSQQHTMGNNENTFSLPLQAPRQGKKSRKPSECQ 442


>AB025253-1|BAA88577.1|  499|Caenorhabditis elegans DAZ-1 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 203 DYPQWHWLGR-ENSFKIPIQTSRHSNIARSEQGCQ 304
           ++ Q H +G  EN+F +P+Q  R    +R    CQ
Sbjct: 409 NFSQQHTMGNNENTFSLPLQAPRQGKKSRKPSECQ 443


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 264 LVWMGILKLFSRPSQCHW 211
           L+W+G+    S PSQC W
Sbjct: 82  LIWLGLYCFESDPSQCFW 99


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 264 LVWMGILKLFSRPSQCHW 211
           L+W+G+    S PSQC W
Sbjct: 82  LIWLGLYCFESDPSQCFW 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,351,141
Number of Sequences: 27780
Number of extensions: 246550
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)