Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0108
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +2

Query: 173 KVCPAADLDYDYPQW-HWLG 229
           K  P   L Y+YP W H LG
Sbjct: 513 KFVPVKYLTYEYPWWSHVLG 532


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +2

Query: 173 KVCPAADLDYDYPQW-HWLG 229
           K  P   L Y+YP W H LG
Sbjct: 566 KFVPVKYLTYEYPWWSHVLG 585


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +2

Query: 215 WHWLGRENSFKI 250
           W+W+ R +++KI
Sbjct: 282 WYWIDRNSAYKI 293


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 137 NRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQ 259
           N   + S+ D   +CPA        +W+     +S + P+Q
Sbjct: 220 NGLSTESKADLPLLCPAQGFPVPVHRWYKFIEGSSRRQPVQ 260


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 272 SNIARSEQGCQINLCDILPPPPYESPENRHNYGSEK 379
           S+ +R       ++    PP   ES  NRHN   EK
Sbjct: 618 SSASRENTSNTTSMESFKPPTLTESLLNRHNEDMEK 653


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,490
Number of Sequences: 438
Number of extensions: 3226
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)