Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0108
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenas...    29   2.7  
At4g38550.1 68417.m05458 expressed protein                             28   4.7  
At5g45330.1 68418.m05564 expressed protein ; expression supporte...    28   6.2  
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    28   6.2  
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    28   6.2  
At5g06640.1 68418.m00750 proline-rich extensin-like family prote...    27   8.2  
At4g11910.1 68417.m01894 expressed protein hypothetical protein ...    27   8.2  

>At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenase,
           cytosolic, putative / NAD-dependent
           glyceraldehyde-3-phosphate dehydrogenase, putative
           similar to glyceraldehyde-3-phosphate dehydrogenase
           [Pinus sylvestris] GI:1100223; contains Pfam profiles
           PF02800: Glyceraldehyde 3-phosphate dehydrogenase
           C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
           dehydrogenase NAD binding domain
          Length = 422

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 77  HDNVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDY 208
           H N +  INV++D     +  +    S++D S++ P ADL  DY
Sbjct: 136 HGNFKGSINVIDDSTLEINGKKVNVVSKRDPSEI-PWADLGADY 178


>At4g38550.1 68417.m05458 expressed protein
          Length = 612

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 329 PPPYESPENRHNYGSEK 379
           PPPY +P+ R NY  E+
Sbjct: 204 PPPYRTPDRRSNYDKEQ 220


>At5g45330.1 68418.m05564 expressed protein ; expression supported
           by MPSS
          Length = 571

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 68  ELRHDNVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDY 208
           E+R++ +   +NV +   G  +    G+  R+      P  D  YDY
Sbjct: 45  EIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDY 91


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 212 GDSRNLNQRPDKLCFCPVYSSIQICSCGKNR 120
           GD  N  +R   LCF  ++ S   C C  NR
Sbjct: 509 GDFDNKRERECFLCFYDLHMSASSCKCSPNR 539


>At3g25500.1 68416.m03171 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 1051

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 347 DSHTAAAAVYHIDLFDSPAPTSRCSNVCSFGWEF*SCSPV--PANAIGDSRNLNQRPDK 177
           +SH     +  +D   S +P+S  S+VCS   +    SPV  P  +  +S++L+  PD+
Sbjct: 443 NSHGGQGFLKQLDALRSRSPSSSSSSVCSSPEKASHKSPVTSPKLSSRNSQSLSSSPDR 501


>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 689

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 326 PPPPYESPENRHNYGS 373
           PPPPY SP  + NY S
Sbjct: 512 PPPPYHSPSPKVNYKS 527


>At4g11910.1 68417.m01894 expressed protein hypothetical protein
           F7H19.100 -Arabidopsis thaliana,PID:e1310060
          Length = 466

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 281 ARSEQGCQINLCDILPPPP 337
           A S  GC+   C+ILP PP
Sbjct: 397 ATSHDGCKTPTCEILPEPP 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,408,046
Number of Sequences: 28952
Number of extensions: 220737
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)