Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0106
         (741 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DD7972 Cluster: PREDICTED: hypothetical protein;...    33   5.6  
UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Re...    33   5.6  

>UniRef50_UPI0000DD7972 Cluster: PREDICTED: hypothetical protein;
           n=2; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 139

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 5   LPRPSDPKPTSPARGAPCRSTNEALARRGRHGTTVAYIVDDSGSDHKFP 151
           LPR + P P+ PA+  P RS  E    RG     +    DD G    FP
Sbjct: 56  LPRVAPPPPSPPAQARPLRSP-ETRGHRGVAAVPLGLCADDLGGRSAFP 103


>UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Rep:
           ACR023Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 769

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 8   PRPSDPKPTSPARGAPCRSTNEALARRGRH 97
           P P DP+PTSPA+ A  R ++ +L   G H
Sbjct: 550 PPPGDPQPTSPAQNATRRPSDASLGYPGSH 579


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,389,628
Number of Sequences: 1657284
Number of extensions: 11611725
Number of successful extensions: 28973
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28912
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)