Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0098
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 100 2e-22
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 39 8e-04
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.46
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 29 0.61
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 3.3
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.7
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 7.5
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 7.5
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.5
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.9
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.9
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 100 bits (240), Expect = 2e-22
Identities = 55/140 (39%), Positives = 82/140 (58%)
Frame = +1
Query: 67 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 246
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60
Query: 247 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 426
+CRY ++DFE+ + +G + K+ +SW PD A +K KM+YSSS D L+++ G+
Sbjct: 61 DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114
Query: 427 KYIQATDLSEASHEAVEEKL 486
IQATD SE ++E V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 38.7 bits (86), Expect = 8e-04
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Frame = +1
Query: 133 RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 312
R + I +E DV+T+ E++ E D +K EC G + + + S
Sbjct: 26 RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76
Query: 313 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKK--SLVGVQKYIQATDLSEASHEAVEEKL 486
KK L L+S+ P+ A V++KMLY+SS A + +L + + A+ E ++ + + L
Sbjct: 77 KKNLLQLISYVPENANVRRKMLYASSRAAFVRCVTLAKLDESYFASTPEELDYQQIMKSL 136
Query: 487 RATDRQ*TAFTHELATK 537
+ Q EL K
Sbjct: 137 SKQEDQSPLRQDELERK 153
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +1
Query: 322 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASHEAV 474
K+ + CP A VK +M+YSSS D++K L + + I++ D ++ + + +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 29.5 bits (63), Expect = 0.46
Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 3/198 (1%)
Frame = +1
Query: 40 LRE*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGE-RNAEYEQF 216
LR ++ G D+ ++ +E ++KK + F RD++++ ++ R
Sbjct: 41 LRSEGSELIFGGRSFDSLLSSIKETMEEKKKKSSSFEKRDKRRVQLKEKSPLRTPRNRTQ 100
Query: 217 LEDLQ--KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSS 390
+ D + + T +F+ Q T A+K + P T K + ++
Sbjct: 101 IIDARSTRKDTENESLRKNNFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNAE 160
Query: 391 FDALKKSLVGVQKYIQATDLSEASHEAVEEKLRATDRQ*TAFTHELATKPNPLSDTPALT 570
A KK + G +KY + S ++ E K R DR + FT LS ++
Sbjct: 161 RPASKKPVFGSKKYFDVINDSNVENKE-ETKDRNLDRALSKFTQSREKNEQNLSSKASVL 219
Query: 571 TRGHDTTSRLVLLQRENE 624
+ +LL++ N+
Sbjct: 220 -----RNKKSILLKKRNQ 232
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 298 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASHEAVE 477
T++ LF++ W P M+Y+S+ + + V K +A D + + EAV+
Sbjct: 79 TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137
Query: 478 EKL 486
E L
Sbjct: 138 EFL 140
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 388 SFDALKKSLVGVQKYIQATDLSEAS 462
S +AL++ L G + Y+Q+TD++ S
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMS 212
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -1
Query: 341 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 225
HD+ +++ S +H C ++S P+ LH+P+P C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 7.5
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = -1
Query: 557 VSESGFGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWMYF*TPTR---DFFRASNE 387
+ E +G ++ SCV+ YW + + A +R + + + P++ R N
Sbjct: 56 LEEEQWGVLSGSCVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQIERYINA 115
Query: 386 LEYNIFFLTLAVSGHHDIR-KSFCFLLASDVP 294
LE + +L H D +S C L D+P
Sbjct: 116 LENELRWL----RNHVDASVRSQCLLKYEDIP 143
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 94 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 273
K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166
Query: 274 E 276
+
Sbjct: 167 Q 167
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 293 WHWCVYSKSNRPY--LHSPVPPFCRSSRNCSYSALRSPTVSTSICF 162
W++ Y+ S R Y VPP+CR +R+ + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 76 TVSDACKTTYEEIKKDKKHRYV 141
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 73 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 177
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 483 APRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PL 599
APR R P ++ T A E P + P TR PL
Sbjct: 24 APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,825
Number of Sequences: 5004
Number of extensions: 43869
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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