Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0098
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 111 4e-25
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 109 2e-24
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 104 6e-23
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 102 3e-22
03_06_0479 + 34217170-34217172,34217337-34217786 99 2e-21
05_01_0103 + 686770-687017,687120-687270 100 2e-21
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 99 3e-21
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 97 1e-20
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 79 4e-15
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 57 1e-08
12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665 30 1.5
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 29 2.6
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 28 5.9
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 111 bits (268), Expect = 4e-25
Identities = 52/143 (36%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Frame = +1
Query: 64 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 240
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G+R YE F L +G
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEG- 82
Query: 241 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 420
+CR+ ++DF++ T+E K ++F + W PD AKV+ KMLY+SS + KK L G
Sbjct: 83 --DCRFAIYDFDFL-----TAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNG 135
Query: 421 VQKYIQATDLSEASHEAVEEKLR 489
+Q +QATD E S +A++++++
Sbjct: 136 IQLEVQATDAGEISLDALKDRVK 158
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 109 bits (262), Expect = 2e-24
Identities = 56/141 (39%), Positives = 86/141 (60%), Gaps = 1/141 (0%)
Frame = +1
Query: 64 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 240
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G+ Y+ F L
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLP--- 80
Query: 241 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 420
ECRY +FDF++ T E +K K+F +SW PDT++V+ KMLY+SS D K+ L G
Sbjct: 81 ADECRYAVFDFDFV-----TDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDG 135
Query: 421 VQKYIQATDLSEASHEAVEEK 483
+Q +QATD SE S + V+ +
Sbjct: 136 IQVELQATDPSEMSMDIVKSR 156
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 104 bits (250), Expect = 6e-23
Identities = 50/141 (35%), Positives = 86/141 (60%), Gaps = 1/141 (0%)
Frame = +1
Query: 64 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 240
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G ++ F++ L +
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPES- 69
Query: 241 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 420
+CRY ++DF++ T E +K K+F ++W P ++++ KMLY++S + ++ L G
Sbjct: 70 --DCRYAIYDFDFV-----TEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDG 122
Query: 421 VQKYIQATDLSEASHEAVEEK 483
V IQATD SE E + E+
Sbjct: 123 VHYEIQATDPSELDIELLRER 143
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 102 bits (244), Expect = 3e-22
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Frame = +1
Query: 70 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDLQKGGTG 246
G+ V+D CK ++E+K + R++VF I D+ +I VE +G+ YE F L
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLP---AD 69
Query: 247 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 426
ECRY ++D ++ T E +K K+F SW PDTA+ + KMLY+SS D ++ L G+Q
Sbjct: 70 ECRYAVYDLDFV-----TDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQ 124
Query: 427 KYIQATDLSEASHEAVEEK 483
IQATD SE S + + +
Sbjct: 125 CEIQATDPSEMSLDIIRAR 143
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 99 bits (238), Expect = 2e-21
Identities = 54/145 (37%), Positives = 87/145 (60%), Gaps = 7/145 (4%)
Frame = +1
Query: 67 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGT 243
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +++ L G
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADG- 64
Query: 244 GECRYGLFDFEYT-HQCQGTSEASK-----KQKLFLMSWCPDTAKVKKKMLYSSSFDALK 405
CRY ++D ++T T+ A + + K+F +SW P A V+ KM+Y+SS + K
Sbjct: 65 --CRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFK 122
Query: 406 KSLVGVQKYIQATDLSEASHEAVEE 480
K L GVQ +QATD SE + + +++
Sbjct: 123 KELDGVQIDLQATDPSELTLDVLKD 147
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +1
Query: 73 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 249
+ V D CK + E+K + +R++++ I ++K+ + VE VGE Y+ F L E
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLP---ANE 57
Query: 250 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK 429
CRY +FD+++ T E +K K+F ++W PDT++V+ KM+Y+SS D K+ L G+Q
Sbjct: 58 CRYAIFDYDFV-----TEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQV 112
Query: 430 YIQATDLSEASHEAV 474
+QATD +E + +
Sbjct: 113 ELQATDPTEVGLDVI 127
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 99.1 bits (236), Expect = 3e-21
Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Frame = +1
Query: 37 FLRE*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQ 213
F+R H +SG+ V+ + T+ E++ K RYV+F I + +KQ+ VE G Y+
Sbjct: 3 FMRS-HSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDD 61
Query: 214 FLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSF 393
FL L + +CRY L+DF++ T E +K K+F ++W P T++++ KMLYS+S
Sbjct: 62 FLASLPEN---DCRYALYDFDFV-----TGENVQKSKIFFIAWSPSTSRIRAKMLYSTSK 113
Query: 394 DALKKSLVGVQKYIQATDLSE 456
D +K+ L G IQATD +E
Sbjct: 114 DRIKQELDGFHYEIQATDPTE 134
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 97.1 bits (231), Expect = 1e-20
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Frame = +1
Query: 64 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 240
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G+ Y+ F +
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMP--- 325
Query: 241 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 420
ECRY +FDF++ T E +K K+F +SW PDT+KV+ KMLY+SS D K+ L G
Sbjct: 326 ASECRYAVFDFDFV-----TDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDG 380
Query: 421 VQ 426
+Q
Sbjct: 381 IQ 382
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 78.6 bits (185), Expect = 4e-15
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Frame = +1
Query: 73 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 249
+ V + K+ + E+K+ K HRYV+F I D ++ I VE G Y+ F L +
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLP---ADD 76
Query: 250 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK 429
CRY ++D ++ + + +K K+F +SW P ++++ K +Y+ S + + L GV
Sbjct: 77 CRYAVYDLDFV-----SDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHF 131
Query: 430 YIQATDLSEASHEAVEEKLRAT 495
IQATD + E + + T
Sbjct: 132 EIQATDPDDMDLEVLRGRANRT 153
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 57.2 bits (132), Expect = 1e-08
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Frame = +1
Query: 73 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 249
+ V + K+ + E+ + K HRYV+F I D ++ I VE G Y+ F L +
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLP----AD 95
Query: 250 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK 429
Y L DF C +K K+F +SW P + ++ K +Y+ + + L GV
Sbjct: 96 AVYDL-DFVSDDNC-------RKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHF 147
Query: 430 YIQATDLSEASHEAVEEKLRAT 495
IQATD + E + + T
Sbjct: 148 EIQATDPDDMDLEVLRGRANRT 169
>12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665
Length = 366
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/54 (42%), Positives = 28/54 (51%)
Frame = -2
Query: 493 WRGASLRRPHETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTTTS 332
WR +SLRRP LPR R L C S++ + S P+RCP TTTS
Sbjct: 225 WR-SSLRRP---LPR-RHL-CVSDIGIDSASISSFSPAHLRLDHPFRCPATTTS 272
>09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Frame = +1
Query: 211 QFLEDLQKGGTG-ECRYGL-FDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 384
+F+ +++ G G E + + DF Q + +EA+ FL+ + + + + + L+
Sbjct: 778 EFISEIKMGLHGYEMEFNMNLDFWSIIQKEAIAEAASNINSFLLKYSEENSCAEAQSLHM 837
Query: 385 SSFDALKKSLVGVQKYIQATD--LSEASHEAVEEKLRATDRQ*TAFTHELATKPNPLSD 555
D LK ++ I+ + LS+ +A+E+ L + + ++A + + +SD
Sbjct: 838 QEMDKLKLNVDTFNLVIREKEEYLSQIEFKAIEDHLDFLRHELDSLRGKVAKQDSGISD 896
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 100 TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 246
T +++ +D+ + ++ EK D E + E NA YE+ + L+ G G
Sbjct: 140 TKQKVAEDENRNLIDRWML-EKMKDAERLNEANAMYEEMVLKLKSAGVG 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,954
Number of Sequences: 37544
Number of extensions: 324785
Number of successful extensions: 1118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -