Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0097
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    30   0.29 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.0  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.2  

>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = -3

Query: 397  RTPMWNKENKTLRFNSKNSSKTPKYRIFIKHPTKFYNTNYRQKSSCFGTK 248
            RTP WN  NKT  +N  N  KTP +    K P   +N   +  S   GTK
Sbjct: 871  RTPAWNSGNKTPAWNVGN--KTPAWNSGAKTPA--WNAGNKTPSWNNGTK 916



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 397 RTPMWNKENKTLRFNSKNSSKTPKYRIFIKHP 302
           RTP WN  NKT  +N+   S+TP +    K P
Sbjct: 853 RTPAWNSGNKTPAWNA--GSRTPAWNSGNKTP 882



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 397 RTPMWNKENKTLRFNSKNSSKTPKYRIFIKHP 302
           RTP WN  +KT  +NS   S+TP +    K P
Sbjct: 835 RTPAWNSGSKTPAWNS--GSRTPAWNSGNKTP 864



 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 397 RTPMWNKENKTLRFNSKNSSKTPKY 323
           RTP WN  ++T  +NS   SKTP +
Sbjct: 826 RTPAWNTGSRTPAWNS--GSKTPAW 848


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 385  WNKENKTLRFNSKNSSKTPKYRIFIKHPTKFY 290
            W   N     N KNSS T   R+F+K  TK +
Sbjct: 1216 WMNPNLMHDSNKKNSSLTDAERLFVKATTKHF 1247


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 375 KIKP*DLIVKIHRKHQNIGFSLSTLQNSTIQ 283
           K KP D +V +  +H N GF    LQN  ++
Sbjct: 100 KWKPGDNVVILDNEHPNQGFGWIALQNDGLE 130


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = +2

Query: 377 LIPHW----CSPSYKKRIN*NYDLEIPHDQMKKLHVCH 478
           LI HW    C P+   ++  +Y   +    M KLH+ H
Sbjct: 449 LIKHWYLEHCPPNQPVKVRVSYQKLLKSHVMNKLHMAH 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,173
Number of Sequences: 5004
Number of extensions: 58581
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)