Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0097
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0105 - 823302-823770,823902-824006,824149-824540                 29   3.7  
11_01_0105 - 786623-787091,787229-787333,787476-787864                 29   3.7  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    29   3.7  
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470           28   8.6  

>12_01_0105 - 823302-823770,823902-824006,824149-824540
          Length = 321

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 310 KHPTKFYNTNYRQKSSCFGTK 248
           KHP  +Y   YRQ+  C  TK
Sbjct: 163 KHPRSYYRCTYRQEEKCKATK 183


>11_01_0105 - 786623-787091,787229-787333,787476-787864
          Length = 320

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 310 KHPTKFYNTNYRQKSSCFGTK 248
           KHP  +Y   YRQ+  C  TK
Sbjct: 162 KHPRSYYRCTYRQEEKCKATK 182


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 315 SLSTLQNSTIQTTDKSRRASAPRDVET 235
           S+S++ N+T QTT KS R  +PR   T
Sbjct: 362 SVSSMSNATSQTTAKSTRGLSPRRTST 388


>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
          Length = 675

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 403 TWRTPMWNKENKTLRFNSKNSSKTPKYRIFIKHPTKFYNTNYRQKSSCFG 254
           T  T   +K N  +   S+N   +P   IF+++PTK Y+       S  G
Sbjct: 448 TRETEPCHKHNSPVH-ESENQQDSPMTDIFLENPTKLYSNRSHYNESDMG 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,460,784
Number of Sequences: 37544
Number of extensions: 276165
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)