Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0097
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56667| Best HMM Match : Pepsin-I3 (HMM E-Value=2.2)                 29   5.0  
SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5)                    28   8.8  

>SB_56667| Best HMM Match : Pepsin-I3 (HMM E-Value=2.2)
          Length = 628

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 692 NY*IPFQGGDISNMSTR*NCNVIQYN--FHTNKQTSVREKYHLLI 564
           NY + ++   ++N  TR   NV+ YN  F  N  TS+  ++  LI
Sbjct: 382 NYTLRYEPNTVTNRKTRKRNNVLWYNPPFSKNTSTSIGHRFLTLI 426


>SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5)
          Length = 327

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 366 P*DLIVKIHRKHQNIGFSLSTLQNSTIQTTDKSRR 262
           P D   +I++  QN+G+S ++L N    +T K R+
Sbjct: 56  PADCRPEINQSAQNVGYSTASLYNPNSTSTSKERK 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,470,860
Number of Sequences: 59808
Number of extensions: 369308
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)