Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0097
         (720 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024230-1|ABC86292.1| 1283|Drosophila melanogaster LD24322p pro...    29   8.4  
AY094956-1|AAM11309.1|  897|Drosophila melanogaster SD01232p pro...    29   8.4  
AE014297-1869|AAF55074.1| 1283|Drosophila melanogaster CG7987-PB...    29   8.4  
AE014297-1868|AAF55075.1| 1283|Drosophila melanogaster CG7987-PA...    29   8.4  

>BT024230-1|ABC86292.1| 1283|Drosophila melanogaster LD24322p protein.
          Length = 1283

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 424  LINTLFVTWRTPMWNKENKTLRFNSKNSSKTPKY 323
            ++N L    R+P+ ++ N  LRF S+ SS TP+Y
Sbjct: 1075 IVNDLEEILRSPLKHERNSRLRFTSE-SSTTPQY 1107


>AY094956-1|AAM11309.1|  897|Drosophila melanogaster SD01232p
           protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 424 LINTLFVTWRTPMWNKENKTLRFNSKNSSKTPKY 323
           ++N L    R+P+ ++ N  LRF S+ SS TP+Y
Sbjct: 769 IVNDLEEILRSPLKHERNSRLRFTSE-SSTTPQY 801


>AE014297-1869|AAF55074.1| 1283|Drosophila melanogaster CG7987-PB,
            isoform B protein.
          Length = 1283

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 424  LINTLFVTWRTPMWNKENKTLRFNSKNSSKTPKY 323
            ++N L    R+P+ ++ N  LRF S+ SS TP+Y
Sbjct: 1075 IVNDLEEILRSPLKHERNSRLRFTSE-SSTTPQY 1107


>AE014297-1868|AAF55075.1| 1283|Drosophila melanogaster CG7987-PA,
            isoform A protein.
          Length = 1283

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 424  LINTLFVTWRTPMWNKENKTLRFNSKNSSKTPKY 323
            ++N L    R+P+ ++ N  LRF S+ SS TP+Y
Sbjct: 1075 IVNDLEEILRSPLKHERNSRLRFTSE-SSTTPQY 1107


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,783,672
Number of Sequences: 53049
Number of extensions: 536222
Number of successful extensions: 981
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)